miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5599 5' -60.4 NC_001806.1 + 93870 0.66 0.752943
Target:  5'- -cUCcCGGCUugccgguCGGCgGGCCCGcGGGa -3'
miRNA:   3'- gaAGcGCCGGu------GCCGgUUGGGCaCCC- -5'
5599 5' -60.4 NC_001806.1 + 119622 0.66 0.724843
Target:  5'- gCUUUGUGGCCccaGcGCCccacgGGCCCG-GGGg -3'
miRNA:   3'- -GAAGCGCCGGug-C-CGG-----UUGGGCaCCC- -5'
5599 5' -60.4 NC_001806.1 + 65643 0.66 0.762124
Target:  5'- ---aGgGGCCccgGCGGCCucCCCcUGGGu -3'
miRNA:   3'- gaagCgCCGG---UGCCGGuuGGGcACCC- -5'
5599 5' -60.4 NC_001806.1 + 2768 0.66 0.734294
Target:  5'- --gCGCGggcgggccugcGCCGCGG-CGGCCCG-GGGc -3'
miRNA:   3'- gaaGCGC-----------CGGUGCCgGUUGGGCaCCC- -5'
5599 5' -60.4 NC_001806.1 + 144282 0.66 0.755708
Target:  5'- --aUGUGGCCGCGGgccagcagacggcCCGcgacaccccccccccGCCCGUGuGGg -3'
miRNA:   3'- gaaGCGCCGGUGCC-------------GGU---------------UGGGCAC-CC- -5'
5599 5' -60.4 NC_001806.1 + 147659 0.66 0.762124
Target:  5'- --gCGgGGCgGgCGGCCGGCuCCGccccgGGGg -3'
miRNA:   3'- gaaGCgCCGgU-GCCGGUUG-GGCa----CCC- -5'
5599 5' -60.4 NC_001806.1 + 37625 0.66 0.771199
Target:  5'- aUUCGCGGCgggaaACGGCUGcCCCccaaaGGGg -3'
miRNA:   3'- gAAGCGCCGg----UGCCGGUuGGGca---CCC- -5'
5599 5' -60.4 NC_001806.1 + 22164 0.66 0.733353
Target:  5'- gUUCGaGGCCucgggcgccccgGCGGCCGugugggcGCCCGagcUGGGc -3'
miRNA:   3'- gAAGCgCCGG------------UGCCGGU-------UGGGC---ACCC- -5'
5599 5' -60.4 NC_001806.1 + 46432 0.66 0.762124
Target:  5'- --cCGCGGUCgggcgccugGCGGCCAugcauGCCCGgaUGGcGg -3'
miRNA:   3'- gaaGCGCCGG---------UGCCGGU-----UGGGC--ACC-C- -5'
5599 5' -60.4 NC_001806.1 + 66511 0.66 0.752943
Target:  5'- --aCGCGGgguuuggggauUgGCGGCCAgGCCCGcgagGGGg -3'
miRNA:   3'- gaaGCGCC-----------GgUGCCGGU-UGGGCa---CCC- -5'
5599 5' -60.4 NC_001806.1 + 59978 0.66 0.762124
Target:  5'- --gCGCGGCaccucucUGGCCucgggGACCCG-GGGg -3'
miRNA:   3'- gaaGCGCCGgu-----GCCGG-----UUGGGCaCCC- -5'
5599 5' -60.4 NC_001806.1 + 64770 0.66 0.743663
Target:  5'- ---aGCGcGCCACGGCCu-CCgCGUucucGGGc -3'
miRNA:   3'- gaagCGC-CGGUGCCGGuuGG-GCA----CCC- -5'
5599 5' -60.4 NC_001806.1 + 23582 0.66 0.752943
Target:  5'- ---gGCGGCgccCGCGGCCGccGCCC-UGGa -3'
miRNA:   3'- gaagCGCCG---GUGCCGGU--UGGGcACCc -5'
5599 5' -60.4 NC_001806.1 + 23540 0.66 0.734294
Target:  5'- cCUggGCGGCUgGCGGCggCAGCCCccGGGg -3'
miRNA:   3'- -GAagCGCCGG-UGCCG--GUUGGGcaCCC- -5'
5599 5' -60.4 NC_001806.1 + 2509 0.66 0.724843
Target:  5'- --aCGCGGCCugGGCgGcgggggcggGCCCGg--- -3'
miRNA:   3'- gaaGCGCCGGugCCGgU---------UGGGCaccc -5'
5599 5' -60.4 NC_001806.1 + 88983 0.66 0.752943
Target:  5'- --gCGCGagcGCCGCGGCCAgaagccGCCCGa--- -3'
miRNA:   3'- gaaGCGC---CGGUGCCGGU------UGGGCaccc -5'
5599 5' -60.4 NC_001806.1 + 134969 0.66 0.743663
Target:  5'- -aUCGuCGGCCgucgcgGCGGCCAuCCCGg--- -3'
miRNA:   3'- gaAGC-GCCGG------UGCCGGUuGGGCaccc -5'
5599 5' -60.4 NC_001806.1 + 84109 0.66 0.734294
Target:  5'- -gUCGC-GCCACGGUCcGCCaguccUGGGa -3'
miRNA:   3'- gaAGCGcCGGUGCCGGuUGGgc---ACCC- -5'
5599 5' -60.4 NC_001806.1 + 3094 0.66 0.743663
Target:  5'- ---gGCGGCgGCGGCCGcggaGCUCGgcaggcgcGGGu -3'
miRNA:   3'- gaagCGCCGgUGCCGGU----UGGGCa-------CCC- -5'
5599 5' -60.4 NC_001806.1 + 93107 0.66 0.762124
Target:  5'- uUUCaggcCGGgaaCugGGCCAGCCUGaUGGGc -3'
miRNA:   3'- gAAGc---GCCg--GugCCGGUUGGGC-ACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.