miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5599 5' -60.4 NC_001806.1 + 115328 1.09 0.001341
Target:  5'- cCUUCGCGGCCACGGCCAACCCGUGGGc -3'
miRNA:   3'- -GAAGCGCCGGUGCCGGUUGGGCACCC- -5'
5599 5' -60.4 NC_001806.1 + 50095 0.82 0.104507
Target:  5'- -gUCGgGGCCGCGGCCGugCCGUuacugagcgcGGGg -3'
miRNA:   3'- gaAGCgCCGGUGCCGGUugGGCA----------CCC- -5'
5599 5' -60.4 NC_001806.1 + 70859 0.79 0.15959
Target:  5'- --gCGCGGCCGCGGgacCCgAGCCCGUGGc -3'
miRNA:   3'- gaaGCGCCGGUGCC---GG-UUGGGCACCc -5'
5599 5' -60.4 NC_001806.1 + 128053 0.78 0.167574
Target:  5'- -gUgGCGGCCACGGCC--CCCagGUGGGg -3'
miRNA:   3'- gaAgCGCCGGUGCCGGuuGGG--CACCC- -5'
5599 5' -60.4 NC_001806.1 + 75302 0.78 0.175915
Target:  5'- cCUUCcuaGCGGCCAUGGCCGACagcgCCGcGGGa -3'
miRNA:   3'- -GAAG---CGCCGGUGCCGGUUG----GGCaCCC- -5'
5599 5' -60.4 NC_001806.1 + 75991 0.78 0.177627
Target:  5'- cCUUCGgGGCCGCGGCCGACaCGUacgccgacauguuucGGGu -3'
miRNA:   3'- -GAAGCgCCGGUGCCGGUUGgGCA---------------CCC- -5'
5599 5' -60.4 NC_001806.1 + 79527 0.77 0.198399
Target:  5'- -gUCcCGGCCgaaagcacGCGGCCGgcGCCCGUGGGc -3'
miRNA:   3'- gaAGcGCCGG--------UGCCGGU--UGGGCACCC- -5'
5599 5' -60.4 NC_001806.1 + 88666 0.77 0.208567
Target:  5'- -cUCGCgcagGGCCGCGGCCAugcgcucgcagagauCUCGUGGGg -3'
miRNA:   3'- gaAGCG----CCGGUGCCGGUu--------------GGGCACCC- -5'
5599 5' -60.4 NC_001806.1 + 1915 0.77 0.213061
Target:  5'- --aCGCGGCCcgaGGCCAGCaCCGUGcGGc -3'
miRNA:   3'- gaaGCGCCGGug-CCGGUUG-GGCAC-CC- -5'
5599 5' -60.4 NC_001806.1 + 91178 0.76 0.223346
Target:  5'- --cCGCGGCC-CGcGCCAACgCCGUcGGGg -3'
miRNA:   3'- gaaGCGCCGGuGC-CGGUUG-GGCA-CCC- -5'
5599 5' -60.4 NC_001806.1 + 46627 0.76 0.223346
Target:  5'- --aCGCGGCCACGG-CGACUCGaGGGc -3'
miRNA:   3'- gaaGCGCCGGUGCCgGUUGGGCaCCC- -5'
5599 5' -60.4 NC_001806.1 + 132904 0.75 0.274934
Target:  5'- -cUgGCGGCCcUGGCCGACCuCGgGGGg -3'
miRNA:   3'- gaAgCGCCGGuGCCGGUUGG-GCaCCC- -5'
5599 5' -60.4 NC_001806.1 + 2452 0.75 0.28122
Target:  5'- ---gGCGGCCccCGGCgGcCCCGUGGGg -3'
miRNA:   3'- gaagCGCCGGu-GCCGgUuGGGCACCC- -5'
5599 5' -60.4 NC_001806.1 + 5072 0.75 0.286975
Target:  5'- -gUCGCGGUCugGGCUcggggugggcggcGGCCCGUcgguGGGg -3'
miRNA:   3'- gaAGCGCCGGugCCGG-------------UUGGGCA----CCC- -5'
5599 5' -60.4 NC_001806.1 + 30648 0.74 0.314364
Target:  5'- --gCGCGGCCAgGGUgGGCCCG-GGa -3'
miRNA:   3'- gaaGCGCCGGUgCCGgUUGGGCaCCc -5'
5599 5' -60.4 NC_001806.1 + 147767 0.74 0.321338
Target:  5'- --aCGCGGCCGCGGaCGcgggggGCCCGgggcgGGGg -3'
miRNA:   3'- gaaGCGCCGGUGCCgGU------UGGGCa----CCC- -5'
5599 5' -60.4 NC_001806.1 + 74184 0.74 0.327712
Target:  5'- --aCGUGGCUuCGGCCGccgucguGCCCGUGGu -3'
miRNA:   3'- gaaGCGCCGGuGCCGGU-------UGGGCACCc -5'
5599 5' -60.4 NC_001806.1 + 3454 0.73 0.35038
Target:  5'- -cUCGaCGGCCacGCGGCCGGCCUG-GGc -3'
miRNA:   3'- gaAGC-GCCGG--UGCCGGUUGGGCaCCc -5'
5599 5' -60.4 NC_001806.1 + 141427 0.73 0.35038
Target:  5'- ---gGCGGCgCGCGGCCAACCgGcGGa -3'
miRNA:   3'- gaagCGCCG-GUGCCGGUUGGgCaCCc -5'
5599 5' -60.4 NC_001806.1 + 132620 0.73 0.373356
Target:  5'- --gUGcCGGCCACGGCCGAgUCGgcacGGGa -3'
miRNA:   3'- gaaGC-GCCGGUGCCGGUUgGGCa---CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.