miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5599 5' -60.4 NC_001806.1 + 1915 0.77 0.213061
Target:  5'- --aCGCGGCCcgaGGCCAGCaCCGUGcGGc -3'
miRNA:   3'- gaaGCGCCGGug-CCGGUUG-GGCAC-CC- -5'
5599 5' -60.4 NC_001806.1 + 2452 0.75 0.28122
Target:  5'- ---gGCGGCCccCGGCgGcCCCGUGGGg -3'
miRNA:   3'- gaagCGCCGGu-GCCGgUuGGGCACCC- -5'
5599 5' -60.4 NC_001806.1 + 2509 0.66 0.724843
Target:  5'- --aCGCGGCCugGGCgGcgggggcggGCCCGg--- -3'
miRNA:   3'- gaaGCGCCGGugCCGgU---------UGGGCaccc -5'
5599 5' -60.4 NC_001806.1 + 2545 0.71 0.474862
Target:  5'- --gCGCGGCgAUcgaGGCCAggGCCCGcGGGu -3'
miRNA:   3'- gaaGCGCCGgUG---CCGGU--UGGGCaCCC- -5'
5599 5' -60.4 NC_001806.1 + 2666 0.69 0.58837
Target:  5'- ---gGCGGCCGCGGgCGcCgCCGUGuGGc -3'
miRNA:   3'- gaagCGCCGGUGCCgGUuG-GGCAC-CC- -5'
5599 5' -60.4 NC_001806.1 + 2768 0.66 0.734294
Target:  5'- --gCGCGggcgggccugcGCCGCGG-CGGCCCG-GGGc -3'
miRNA:   3'- gaaGCGC-----------CGGUGCCgGUUGGGCaCCC- -5'
5599 5' -60.4 NC_001806.1 + 2923 0.7 0.530516
Target:  5'- -gUCGCgGGCCgccgccuccggGCGGCCGGgCCGggccGGGa -3'
miRNA:   3'- gaAGCG-CCGG-----------UGCCGGUUgGGCa---CCC- -5'
5599 5' -60.4 NC_001806.1 + 3094 0.66 0.743663
Target:  5'- ---gGCGGCgGCGGCCGcggaGCUCGgcaggcgcGGGu -3'
miRNA:   3'- gaagCGCCGgUGCCGGU----UGGGCa-------CCC- -5'
5599 5' -60.4 NC_001806.1 + 3304 0.69 0.568907
Target:  5'- --gUGCGGCgGCGGCgGggaagcgggGCCCGcGGGu -3'
miRNA:   3'- gaaGCGCCGgUGCCGgU---------UGGGCaCCC- -5'
5599 5' -60.4 NC_001806.1 + 3364 0.7 0.511671
Target:  5'- --cCG-GGCCcCGGCCAGCCCc-GGGa -3'
miRNA:   3'- gaaGCgCCGGuGCCGGUUGGGcaCCC- -5'
5599 5' -60.4 NC_001806.1 + 3454 0.73 0.35038
Target:  5'- -cUCGaCGGCCacGCGGCCGGCCUG-GGc -3'
miRNA:   3'- gaAGC-GCCGG--UGCCGGUUGGGCaCCc -5'
5599 5' -60.4 NC_001806.1 + 3841 0.68 0.637429
Target:  5'- ---gGCcGCCAUGGCgUAGCCCagGUGGGg -3'
miRNA:   3'- gaagCGcCGGUGCCG-GUUGGG--CACCC- -5'
5599 5' -60.4 NC_001806.1 + 4287 0.67 0.695112
Target:  5'- --cCGgGGCUgccCGGCCGugaagcgGCCCGUGGc -3'
miRNA:   3'- gaaGCgCCGGu--GCCGGU-------UGGGCACCc -5'
5599 5' -60.4 NC_001806.1 + 4320 0.7 0.530516
Target:  5'- -gUCGCGGCC--GGCCAccGCCgCGcGGGc -3'
miRNA:   3'- gaAGCGCCGGugCCGGU--UGG-GCaCCC- -5'
5599 5' -60.4 NC_001806.1 + 4398 0.68 0.637429
Target:  5'- --cCGgGGCUugGGCgCGGCCuCGgagagGGGg -3'
miRNA:   3'- gaaGCgCCGGugCCG-GUUGG-GCa----CCC- -5'
5599 5' -60.4 NC_001806.1 + 4677 0.71 0.483945
Target:  5'- --gCGCGGCgACaGgCggUCCGUGGGg -3'
miRNA:   3'- gaaGCGCCGgUGcCgGuuGGGCACCC- -5'
5599 5' -60.4 NC_001806.1 + 4733 0.7 0.511671
Target:  5'- gUUCGCGGCCcCgGGCCGggGCCCGg--- -3'
miRNA:   3'- gAAGCGCCGGuG-CCGGU--UGGGCaccc -5'
5599 5' -60.4 NC_001806.1 + 5072 0.75 0.286975
Target:  5'- -gUCGCGGUCugGGCUcggggugggcggcGGCCCGUcgguGGGg -3'
miRNA:   3'- gaAGCGCCGGugCCGG-------------UUGGGCA----CCC- -5'
5599 5' -60.4 NC_001806.1 + 5605 0.69 0.578621
Target:  5'- --cCGUGGCCGCGGCCcguuggucgAACCCccGGc -3'
miRNA:   3'- gaaGCGCCGGUGCCGG---------UUGGGcaCCc -5'
5599 5' -60.4 NC_001806.1 + 9166 0.67 0.666872
Target:  5'- -aUCGgGGagacaACGGCCGuguaGCCCG-GGGg -3'
miRNA:   3'- gaAGCgCCgg---UGCCGGU----UGGGCaCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.