miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 126033 0.72 0.753037
Target:  5'- cCAGCcugcGGCCGGAUGUACAGucuuCGGCGg -3'
miRNA:   3'- -GUUGua--CCGGCUUGCGUGUU----GCCGCg -5'
5602 3' -53.6 NC_001806.1 + 132155 0.72 0.762729
Target:  5'- -cGCGUuGCCGAgcaucccgACGCGCGGCuGGCGUg -3'
miRNA:   3'- guUGUAcCGGCU--------UGCGUGUUG-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 63009 0.71 0.772303
Target:  5'- gGACG-GGCCccgcGAACGCACAGC-GCGUu -3'
miRNA:   3'- gUUGUaCCGG----CUUGCGUGUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 76481 0.71 0.772303
Target:  5'- gGACcUGGCCGAuaccaaggACGC-CGugGuGCGCg -3'
miRNA:   3'- gUUGuACCGGCU--------UGCGuGUugC-CGCG- -5'
5602 3' -53.6 NC_001806.1 + 128522 0.71 0.781747
Target:  5'- gCGGCAUGGCCaugcGGGcCGCAgccaGACGGCGg -3'
miRNA:   3'- -GUUGUACCGG----CUU-GCGUg---UUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 108922 0.71 0.781747
Target:  5'- --gUcgGGCCGAgggACGUACAGgccgUGGCGCu -3'
miRNA:   3'- guuGuaCCGGCU---UGCGUGUU----GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 100815 0.71 0.781747
Target:  5'- gCGACAggUGGCgaaaGGGCGCgAUGGCGGCGUc -3'
miRNA:   3'- -GUUGU--ACCGg---CUUGCG-UGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 50648 0.71 0.781747
Target:  5'- gGGCGUGcggGGACGCGCAcCGGCGCc -3'
miRNA:   3'- gUUGUACcggCUUGCGUGUuGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 1562 0.71 0.791053
Target:  5'- gGGCcgGGCCGGcGCGCACcGCcucGCGCc -3'
miRNA:   3'- gUUGuaCCGGCU-UGCGUGuUGc--CGCG- -5'
5602 3' -53.6 NC_001806.1 + 34423 0.71 0.791053
Target:  5'- gGGCcgGGCCGGGC-CGgGugGGCGg -3'
miRNA:   3'- gUUGuaCCGGCUUGcGUgUugCCGCg -5'
5602 3' -53.6 NC_001806.1 + 3287 0.71 0.800211
Target:  5'- aGGCggGGCgCGucgGCGUGCGGCGGCGg -3'
miRNA:   3'- gUUGuaCCG-GCu--UGCGUGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 120741 0.71 0.800211
Target:  5'- -----cGGCCGGucuCGC-UAGCGGCGCc -3'
miRNA:   3'- guuguaCCGGCUu--GCGuGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 105878 0.71 0.800211
Target:  5'- gGGCAUGGaCCGcAUGUAC--UGGCGCg -3'
miRNA:   3'- gUUGUACC-GGCuUGCGUGuuGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 91001 0.71 0.800211
Target:  5'- -cGCG-GGgCGGGCGCgACGGCGGCGg -3'
miRNA:   3'- guUGUaCCgGCUUGCG-UGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 2739 0.71 0.800211
Target:  5'- uCGGCG-GGCCGGcGCGaCACGGCcacggGGCGCg -3'
miRNA:   3'- -GUUGUaCCGGCU-UGC-GUGUUG-----CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 2527 0.71 0.809213
Target:  5'- gGGCG-GGCCcGGCGCACcgcGCGGCGa -3'
miRNA:   3'- gUUGUaCCGGcUUGCGUGu--UGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 4658 0.7 0.81805
Target:  5'- gCGGCGgcugGGCCGGcggGCGCGgCGACaGGCGg -3'
miRNA:   3'- -GUUGUa---CCGGCU---UGCGU-GUUG-CCGCg -5'
5602 3' -53.6 NC_001806.1 + 49288 0.7 0.81805
Target:  5'- uCGACGggaaGGCCcgcGAGCcCgACGACGGCGCg -3'
miRNA:   3'- -GUUGUa---CCGG---CUUGcG-UGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 99945 0.7 0.824133
Target:  5'- uGGCG-GGCCGcGCGC-CGggagucgaccccgcGCGGCGCg -3'
miRNA:   3'- gUUGUaCCGGCuUGCGuGU--------------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 103111 0.7 0.826713
Target:  5'- uCGACGgggagcucGGCCGccUGCAUGGCGGCGUu -3'
miRNA:   3'- -GUUGUa-------CCGGCuuGCGUGUUGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.