miRNA display CGI


Results 21 - 40 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 5' -66 NC_001806.1 + 35559 0.75 0.138236
Target:  5'- uCGGC-GCGCCCGGCGCc-GCGCCGAa -3'
miRNA:   3'- -GCCGcCGCGGGCUGCGccCGCGGUUg -5'
5602 5' -66 NC_001806.1 + 142150 0.75 0.122484
Target:  5'- uGGCGGCGuCCCGuCGCGgGGUGggguCCGACg -3'
miRNA:   3'- gCCGCCGC-GGGCuGCGC-CCGC----GGUUG- -5'
5602 5' -66 NC_001806.1 + 147714 0.74 0.15958
Target:  5'- aGGCGGCGCUCGcACGCacGGG-GCCAc- -3'
miRNA:   3'- gCCGCCGCGGGC-UGCG--CCCgCGGUug -5'
5602 5' -66 NC_001806.1 + 147495 0.74 0.15958
Target:  5'- gGGCGGCGCCgGAgGgGGcgGCGCCGc- -3'
miRNA:   3'- gCCGCCGCGGgCUgCgCC--CGCGGUug -5'
5602 5' -66 NC_001806.1 + 4045 0.74 0.15958
Target:  5'- gCGGCGuCGCCCaGCuCGGGCGCCcACa -3'
miRNA:   3'- -GCCGCcGCGGGcUGcGCCCGCGGuUG- -5'
5602 5' -66 NC_001806.1 + 75683 0.74 0.155456
Target:  5'- uGGCGGCccagcgcGCCCGcaguagccacgaGCGCuGGGCcGCCGACg -3'
miRNA:   3'- gCCGCCG-------CGGGC------------UGCG-CCCG-CGGUUG- -5'
5602 5' -66 NC_001806.1 + 22130 0.74 0.152154
Target:  5'- gGGgGGCGCCCGAgGCGgaggaGGCG-CGACg -3'
miRNA:   3'- gCCgCCGCGGGCUgCGC-----CCGCgGUUG- -5'
5602 5' -66 NC_001806.1 + 35312 0.74 0.151791
Target:  5'- aGGCGGCGCaacCCGACGCGGGUuuauggaGCgCGGg -3'
miRNA:   3'- gCCGCCGCG---GGCUGCGCCCG-------CG-GUUg -5'
5602 5' -66 NC_001806.1 + 132147 0.74 0.149988
Target:  5'- uGGCGGCGCgcguugccgagcaucCCGACGCGcggcuGGCGUgGGCg -3'
miRNA:   3'- gCCGCCGCG---------------GGCUGCGC-----CCGCGgUUG- -5'
5602 5' -66 NC_001806.1 + 111218 0.74 0.145042
Target:  5'- gCGGcCGGgGCCuCGAUGUGGGUGgCGGCg -3'
miRNA:   3'- -GCC-GCCgCGG-GCUGCGCCCGCgGUUG- -5'
5602 5' -66 NC_001806.1 + 147800 0.74 0.141601
Target:  5'- gGGCGGaGCCUGGCaUGGGCGCCGc- -3'
miRNA:   3'- gCCGCCgCGGGCUGcGCCCGCGGUug -5'
5602 5' -66 NC_001806.1 + 86071 0.73 0.188204
Target:  5'- gCGGCGGCGUCUagcuCGCggaGGGCGgCCAGCc -3'
miRNA:   3'- -GCCGCCGCGGGcu--GCG---CCCGC-GGUUG- -5'
5602 5' -66 NC_001806.1 + 52036 0.73 0.187765
Target:  5'- uCGGCGGCaGCCCGGaggcgccCGCGGaaacguucgcGCGCCAu- -3'
miRNA:   3'- -GCCGCCG-CGGGCU-------GCGCC----------CGCGGUug -5'
5602 5' -66 NC_001806.1 + 25422 0.73 0.183854
Target:  5'- gGGCGGUGgUgGuGCGCGGGCGCCc-- -3'
miRNA:   3'- gCCGCCGCgGgC-UGCGCCCGCGGuug -5'
5602 5' -66 NC_001806.1 + 92456 0.73 0.183854
Target:  5'- gGGCGcgagcgccaacGCGUCCGaggccgccaagGCGCGGGuCGCCAGCc -3'
miRNA:   3'- gCCGC-----------CGCGGGC-----------UGCGCCC-GCGGUUG- -5'
5602 5' -66 NC_001806.1 + 41483 0.73 0.183424
Target:  5'- aGGCGaGCGuCCCGcguuAUGCGGGCccagucgucccagGCCAGCg -3'
miRNA:   3'- gCCGC-CGC-GGGC----UGCGCCCG-------------CGGUUG- -5'
5602 5' -66 NC_001806.1 + 37747 0.73 0.179593
Target:  5'- uGGUGGCGUcgauggugUCGGCgGCGGGCGCCu-- -3'
miRNA:   3'- gCCGCCGCG--------GGCUG-CGCCCGCGGuug -5'
5602 5' -66 NC_001806.1 + 4185 0.73 0.171334
Target:  5'- gGGCgGGgGCCCGGCGcCGGGCcacggcuccccGCUGACg -3'
miRNA:   3'- gCCG-CCgCGGGCUGC-GCCCG-----------CGGUUG- -5'
5602 5' -66 NC_001806.1 + 123217 0.73 0.168923
Target:  5'- uGGCGGaauggaccgagaugcCGCCC-ACGCGGcccuGCGCCGACg -3'
miRNA:   3'- gCCGCC---------------GCGGGcUGCGCC----CGCGGUUG- -5'
5602 5' -66 NC_001806.1 + 91532 0.73 0.188204
Target:  5'- gCGaCGGCGCCgUGAuCGuCGGGCGCCAGg -3'
miRNA:   3'- -GCcGCCGCGG-GCU-GC-GCCCGCGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.