miRNA display CGI


Results 21 - 40 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 5' -66 NC_001806.1 + 3478 0.78 0.072944
Target:  5'- gGcGCGGCGCCCGGCGuCGucgucGGCGUCGGCg -3'
miRNA:   3'- gC-CGCCGCGGGCUGC-GC-----CCGCGGUUG- -5'
5602 5' -66 NC_001806.1 + 3516 0.68 0.3881
Target:  5'- gGGCGGCgucggggucgucGCCCcccgcggggGAgGCGGGCG-CGGCg -3'
miRNA:   3'- gCCGCCG------------CGGG---------CUgCGCCCGCgGUUG- -5'
5602 5' -66 NC_001806.1 + 3605 0.68 0.35772
Target:  5'- cCGGCGGgcaccgcgcgcuCGCCCGGUGCGG-CGgCGGCg -3'
miRNA:   3'- -GCCGCC------------GCGGGCUGCGCCcGCgGUUG- -5'
5602 5' -66 NC_001806.1 + 3644 0.71 0.226357
Target:  5'- aCGGCGGCGaCCCccucgucaucuGCGCcGGCGCCGGg -3'
miRNA:   3'- -GCCGCCGC-GGGc----------UGCGcCCGCGGUUg -5'
5602 5' -66 NC_001806.1 + 3795 0.69 0.329047
Target:  5'- uGGCcacGGCGgCCGcCGCGuGCGCCAGg -3'
miRNA:   3'- gCCG---CCGCgGGCuGCGCcCGCGGUUg -5'
5602 5' -66 NC_001806.1 + 3910 0.67 0.395955
Target:  5'- gCGcGCGGCGCCCGAgauccggaaGCaGGCcugguCCAGCg -3'
miRNA:   3'- -GC-CGCCGCGGGCUg--------CGcCCGc----GGUUG- -5'
5602 5' -66 NC_001806.1 + 4045 0.74 0.15958
Target:  5'- gCGGCGuCGCCCaGCuCGGGCGCCcACa -3'
miRNA:   3'- -GCCGCcGCGGGcUGcGCCCGCGGuUG- -5'
5602 5' -66 NC_001806.1 + 4079 0.67 0.420126
Target:  5'- cCGG-GGCGCCCGAgGCcucgaaccGGCGUCGc- -3'
miRNA:   3'- -GCCgCCGCGGGCUgCGc-------CCGCGGUug -5'
5602 5' -66 NC_001806.1 + 4185 0.73 0.171334
Target:  5'- gGGCgGGgGCCCGGCGcCGGGCcacggcuccccGCUGACg -3'
miRNA:   3'- gCCG-CCgCGGGCUGC-GCCCG-----------CGGUUG- -5'
5602 5' -66 NC_001806.1 + 4347 0.77 0.091246
Target:  5'- cCGGCGGCGCUCGAUGCGGccCGCgGAg -3'
miRNA:   3'- -GCCGCCGCGGGCUGCGCCc-GCGgUUg -5'
5602 5' -66 NC_001806.1 + 4443 0.8 0.053955
Target:  5'- gGGCGGCGUCCGccCGgGGGCuGCCGGCg -3'
miRNA:   3'- gCCGCCGCGGGCu-GCgCCCG-CGGUUG- -5'
5602 5' -66 NC_001806.1 + 4658 0.69 0.322149
Target:  5'- gCGGCGGCugGgCCGGCG-GGcGCGgCGACa -3'
miRNA:   3'- -GCCGCCG--CgGGCUGCgCC-CGCgGUUG- -5'
5602 5' -66 NC_001806.1 + 4745 0.7 0.259116
Target:  5'- gGGcCGGgGCCCGGuCGCcggcGGCGUCGGCu -3'
miRNA:   3'- gCC-GCCgCGGGCU-GCGc---CCGCGGUUG- -5'
5602 5' -66 NC_001806.1 + 4830 0.7 0.264938
Target:  5'- gGGCGGCgagGCCgCGGgGuCGGGCGUCGGg -3'
miRNA:   3'- gCCGCCG---CGG-GCUgC-GCCCGCGGUUg -5'
5602 5' -66 NC_001806.1 + 4939 0.76 0.116662
Target:  5'- cCGGCgucGGUGCCCGcCGCGGGgGCCc-- -3'
miRNA:   3'- -GCCG---CCGCGGGCuGCGCCCgCGGuug -5'
5602 5' -66 NC_001806.1 + 5074 0.66 0.445169
Target:  5'- -cGCGGUcuggGCUCGGgGUGGGCGgCGGCc -3'
miRNA:   3'- gcCGCCG----CGGGCUgCGCCCGCgGUUG- -5'
5602 5' -66 NC_001806.1 + 5106 0.7 0.264938
Target:  5'- uCGGUGGgGCCCGGgGagccgGGGCGCUg-- -3'
miRNA:   3'- -GCCGCCgCGGGCUgCg----CCCGCGGuug -5'
5602 5' -66 NC_001806.1 + 5362 0.68 0.343168
Target:  5'- --uCGGCGuCCCGGCGCGGcgaGCGUCuGACg -3'
miRNA:   3'- gccGCCGC-GGGCUGCGCC---CGCGG-UUG- -5'
5602 5' -66 NC_001806.1 + 5941 0.66 0.479812
Target:  5'- gGGCGGgacCGCCCcaagGGgGCGGGgcCGCCGGg -3'
miRNA:   3'- gCCGCC---GCGGG----CUgCGCCC--GCGGUUg -5'
5602 5' -66 NC_001806.1 + 6049 0.66 0.4537
Target:  5'- uGGCGccGUGCCCGACucc-GCGCCGGCc -3'
miRNA:   3'- gCCGC--CGCGGGCUGcgccCGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.