miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 5' -66 NC_001806.1 + 370 0.66 0.471024
Target:  5'- gCGcGCGcGCGCCCG-CGgGGG-GCCcgGGCu -3'
miRNA:   3'- -GC-CGC-CGCGGGCuGCgCCCgCGG--UUG- -5'
5602 5' -66 NC_001806.1 + 1440 0.68 0.3881
Target:  5'- gGGCGGCG-CCGGCGgcaGGGCccccggGCCGu- -3'
miRNA:   3'- gCCGCCGCgGGCUGCg--CCCG------CGGUug -5'
5602 5' -66 NC_001806.1 + 1679 0.68 0.343168
Target:  5'- cCGGC-GCGCCgGGCGCcauGGCGUCggUg -3'
miRNA:   3'- -GCCGcCGCGGgCUGCGc--CCGCGGuuG- -5'
5602 5' -66 NC_001806.1 + 1715 0.67 0.436728
Target:  5'- aGGCcGcCGCCCGGC-CGuccaGCGCCGGCa -3'
miRNA:   3'- gCCGcC-GCGGGCUGcGCc---CGCGGUUG- -5'
5602 5' -66 NC_001806.1 + 1847 0.68 0.380348
Target:  5'- gCGGCGGCGCgUCGGgGUacaGGcGCGCguGCg -3'
miRNA:   3'- -GCCGCCGCG-GGCUgCG---CC-CGCGguUG- -5'
5602 5' -66 NC_001806.1 + 2008 0.69 0.322149
Target:  5'- aGGCGuGCuGCCgCGAcacCGCGGGCccGUCGGCg -3'
miRNA:   3'- gCCGC-CG-CGG-GCU---GCGCCCG--CGGUUG- -5'
5602 5' -66 NC_001806.1 + 2218 0.69 0.331837
Target:  5'- aGGCGGCcguGUCCGGCccGCacagccgguuggccaGGGCcGCCAGCa -3'
miRNA:   3'- gCCGCCG---CGGGCUG--CG---------------CCCG-CGGUUG- -5'
5602 5' -66 NC_001806.1 + 2299 0.66 0.479812
Target:  5'- cCGGCGGCcccCCCGAgGCcccGCcGCCGGCc -3'
miRNA:   3'- -GCCGCCGc--GGGCUgCGcc-CG-CGGUUG- -5'
5602 5' -66 NC_001806.1 + 2414 0.68 0.35772
Target:  5'- gCGGCGcagcGgGCCCGaggcGCGCaGGGgGCCAAa -3'
miRNA:   3'- -GCCGC----CgCGGGC----UGCG-CCCgCGGUUg -5'
5602 5' -66 NC_001806.1 + 2460 0.66 0.497622
Target:  5'- cCGGCGGC-CCCGugGgggUGGGgGUUAu- -3'
miRNA:   3'- -GCCGCCGcGGGCugC---GCCCgCGGUug -5'
5602 5' -66 NC_001806.1 + 2511 0.69 0.322149
Target:  5'- gCGGCcugGGCGgCgGGgGCGGGC-CCGGCg -3'
miRNA:   3'- -GCCG---CCGCgGgCUgCGCCCGcGGUUG- -5'
5602 5' -66 NC_001806.1 + 2662 0.73 0.167332
Target:  5'- gGGCGGCGgCC---GCGGGCGCCGc- -3'
miRNA:   3'- gCCGCCGCgGGcugCGCCCGCGGUug -5'
5602 5' -66 NC_001806.1 + 2739 0.69 0.31536
Target:  5'- uCGGCGG-G-CCGGCGCgacacggccacgGGGCGCgGGCg -3'
miRNA:   3'- -GCCGCCgCgGGCUGCG------------CCCGCGgUUG- -5'
5602 5' -66 NC_001806.1 + 2776 0.68 0.35772
Target:  5'- gGGCcuGCGCCgCGGCGgcccgGGGCGCCGc- -3'
miRNA:   3'- gCCGc-CGCGG-GCUGCg----CCCGCGGUug -5'
5602 5' -66 NC_001806.1 + 2833 0.69 0.336053
Target:  5'- cCGGgGGCGUggaggggGGCGCGGGCGCgGGg -3'
miRNA:   3'- -GCCgCCGCGgg-----CUGCGCCCGCGgUUg -5'
5602 5' -66 NC_001806.1 + 2869 0.72 0.216244
Target:  5'- gGGCgcgGGCGUCCGAgcCGgGGGCGUCcGCg -3'
miRNA:   3'- gCCG---CCGCGGGCU--GCgCCCGCGGuUG- -5'
5602 5' -66 NC_001806.1 + 2985 0.68 0.3881
Target:  5'- -cGCGGCGCggggaggCGGCgGCGGcCGCCAGCg -3'
miRNA:   3'- gcCGCCGCGg------GCUG-CGCCcGCGGUUG- -5'
5602 5' -66 NC_001806.1 + 3020 0.78 0.082422
Target:  5'- uCGGCGGCGUCCGguGCGCuGGCcgccgccGCCAGCa -3'
miRNA:   3'- -GCCGCCGCGGGC--UGCGcCCG-------CGGUUG- -5'
5602 5' -66 NC_001806.1 + 3095 0.72 0.206044
Target:  5'- gCGGCGGCGgCCGcggagcucggcagGCGCGGGUcCCGcgGCa -3'
miRNA:   3'- -GCCGCCGCgGGC-------------UGCGCCCGcGGU--UG- -5'
5602 5' -66 NC_001806.1 + 3287 0.71 0.236868
Target:  5'- aGGCggGGCGCgUCGGCGUGcGGCGgCGGCg -3'
miRNA:   3'- gCCG--CCGCG-GGCUGCGC-CCGCgGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.