Results 1 - 20 of 250 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5602 | 5' | -66 | NC_001806.1 | + | 141426 | 0.66 | 0.497622 |
Target: 5'- gGGCGGCGCgCGGCcaaccgGCGGauaacucCGCCcACg -3' miRNA: 3'- gCCGCCGCGgGCUG------CGCCc------GCGGuUG- -5' |
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5602 | 5' | -66 | NC_001806.1 | + | 46093 | 0.77 | 0.098262 |
Target: 5'- gGGCGGUuuuguccgGCCCGgggccuGCGCGGGCGCCu-- -3' miRNA: 3'- gCCGCCG--------CGGGC------UGCGCCCGCGGuug -5' |
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5602 | 5' | -66 | NC_001806.1 | + | 151531 | 0.76 | 0.100712 |
Target: 5'- gGGaCGGCGCCCGugGgccCGGGCgGCCGGg -3' miRNA: 3'- gCC-GCCGCGGGCugC---GCCCG-CGGUUg -5' |
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5602 | 5' | -66 | NC_001806.1 | + | 72677 | 0.76 | 0.108413 |
Target: 5'- aGGCcaaGCGCCCGAauCGGGCGcCCGACg -3' miRNA: 3'- gCCGc--CGCGGGCUgcGCCCGC-GGUUG- -5' |
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5602 | 5' | -66 | NC_001806.1 | + | 34316 | 0.76 | 0.113849 |
Target: 5'- gGGCGGCGCgCCgGACG-GGGCGCUGGa -3' miRNA: 3'- gCCGCCGCG-GG-CUGCgCCCGCGGUUg -5' |
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5602 | 5' | -66 | NC_001806.1 | + | 51249 | 0.76 | 0.116662 |
Target: 5'- gGGCGucaccaugcaGCGCCgGACGCGcGGCGCgAGCu -3' miRNA: 3'- gCCGC----------CGCGGgCUGCGC-CCGCGgUUG- -5' |
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5602 | 5' | -66 | NC_001806.1 | + | 4939 | 0.76 | 0.116662 |
Target: 5'- cCGGCgucGGUGCCCGcCGCGGGgGCCc-- -3' miRNA: 3'- -GCCG---CCGCGGGCuGCGCCCgCGGuug -5' |
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5602 | 5' | -66 | NC_001806.1 | + | 142150 | 0.75 | 0.122484 |
Target: 5'- uGGCGGCGuCCCGuCGCGgGGUGggguCCGACg -3' miRNA: 3'- gCCGCCGC-GGGCuGCGC-CCGC----GGUUG- -5' |
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5602 | 5' | -66 | NC_001806.1 | + | 35559 | 0.75 | 0.138236 |
Target: 5'- uCGGC-GCGCCCGGCGCc-GCGCCGAa -3' miRNA: 3'- -GCCGcCGCGGGCUGCGccCGCGGUUg -5' |
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5602 | 5' | -66 | NC_001806.1 | + | 42637 | 0.77 | 0.095869 |
Target: 5'- gCGGCGGCGUcgcguCCGGUGCGGGgGCUGGCg -3' miRNA: 3'- -GCCGCCGCG-----GGCUGCGCCCgCGGUUG- -5' |
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5602 | 5' | -66 | NC_001806.1 | + | 4347 | 0.77 | 0.091246 |
Target: 5'- cCGGCGGCGCUCGAUGCGGccCGCgGAg -3' miRNA: 3'- -GCCGCCGCGGGCUGCGCCc-GCGgUUg -5' |
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5602 | 5' | -66 | NC_001806.1 | + | 95658 | 0.77 | 0.08662 |
Target: 5'- gCGGCGcgcgcgcgcuucuGCGCCCuGACgGCGGGCGCgGGCa -3' miRNA: 3'- -GCCGC-------------CGCGGG-CUG-CGCCCGCGgUUG- -5' |
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5602 | 5' | -66 | NC_001806.1 | + | 136995 | 0.87 | 0.018465 |
Target: 5'- uGGCGGCGgCCGGCGgGGaGCGCCAGCu -3' miRNA: 3'- gCCGCCGCgGGCUGCgCC-CGCGGUUG- -5' |
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5602 | 5' | -66 | NC_001806.1 | + | 148165 | 0.82 | 0.040828 |
Target: 5'- gCGGCGGCGCCUcugcgugggggGGCGCgGGGCGuCCGGCg -3' miRNA: 3'- -GCCGCCGCGGG-----------CUGCG-CCCGC-GGUUG- -5' |
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5602 | 5' | -66 | NC_001806.1 | + | 4443 | 0.8 | 0.053955 |
Target: 5'- gGGCGGCGUCCGccCGgGGGCuGCCGGCg -3' miRNA: 3'- gCCGCCGCGGGCu-GCgCCCG-CGGUUG- -5' |
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5602 | 5' | -66 | NC_001806.1 | + | 21773 | 0.79 | 0.069384 |
Target: 5'- gGGCGGgGUCCGucgaGCGcGGCGCCGGCa -3' miRNA: 3'- gCCGCCgCGGGCug--CGC-CCGCGGUUG- -5' |
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5602 | 5' | -66 | NC_001806.1 | + | 3478 | 0.78 | 0.072944 |
Target: 5'- gGcGCGGCGCCCGGCGuCGucgucGGCGUCGGCg -3' miRNA: 3'- gC-CGCCGCGGGCUGC-GC-----CCGCGGUUG- -5' |
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5602 | 5' | -66 | NC_001806.1 | + | 147646 | 0.78 | 0.076679 |
Target: 5'- aCGGCGcGCGUCCGcgGgGCGGGCGgCCGGCu -3' miRNA: 3'- -GCCGC-CGCGGGC--UgCGCCCGC-GGUUG- -5' |
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5602 | 5' | -66 | NC_001806.1 | + | 3020 | 0.78 | 0.082422 |
Target: 5'- uCGGCGGCGUCCGguGCGCuGGCcgccgccGCCAGCa -3' miRNA: 3'- -GCCGCCGCGGGC--UGCGcCCG-------CGGUUG- -5' |
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5602 | 5' | -66 | NC_001806.1 | + | 95310 | 0.78 | 0.082627 |
Target: 5'- gCGGCGgacGCGCCCaagggcGGCGCGGGCcCCGACg -3' miRNA: 3'- -GCCGC---CGCGGG------CUGCGCCCGcGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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