miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 5' -66 NC_001806.1 + 146762 0.66 0.4537
Target:  5'- aGGCuGUuccacUCCGACGCGGGgGCCGu- -3'
miRNA:   3'- gCCGcCGc----GGGCUGCGCCCgCGGUug -5'
5602 5' -66 NC_001806.1 + 5074 0.66 0.445169
Target:  5'- -cGCGGUcuggGCUCGGgGUGGGCGgCGGCc -3'
miRNA:   3'- gcCGCCG----CGGGCUgCGCCCGCgGUUG- -5'
5602 5' -66 NC_001806.1 + 74950 0.66 0.461454
Target:  5'- aCGGCGGCGCUgCGGgcggacaUGUGGGgGCUg-- -3'
miRNA:   3'- -GCCGCCGCGG-GCU-------GCGCCCgCGGuug -5'
5602 5' -66 NC_001806.1 + 113092 0.66 0.4537
Target:  5'- uGGCGGC-CCCGGC-CGGcccCGCCGcagACa -3'
miRNA:   3'- gCCGCCGcGGGCUGcGCCc--GCGGU---UG- -5'
5602 5' -66 NC_001806.1 + 94797 0.66 0.445169
Target:  5'- uGcGCuGGC-CCgGACGCGGGgGgCGACg -3'
miRNA:   3'- gC-CG-CCGcGGgCUGCGCCCgCgGUUG- -5'
5602 5' -66 NC_001806.1 + 99725 0.66 0.46232
Target:  5'- aGGgGGCGCUgUGugGUGGGgGgCGAUa -3'
miRNA:   3'- gCCgCCGCGG-GCugCGCCCgCgGUUG- -5'
5602 5' -66 NC_001806.1 + 92249 0.66 0.459725
Target:  5'- gCGGCGGCGCgUGAUGgacauguuuaacaaCGGGUuucugucgGCCAAa -3'
miRNA:   3'- -GCCGCCGCGgGCUGC--------------GCCCG--------CGGUUg -5'
5602 5' -66 NC_001806.1 + 33984 0.66 0.44432
Target:  5'- cCGGgGGuCGCCgGggcagggGCGgGGGCGUgGGCg -3'
miRNA:   3'- -GCCgCC-GCGGgC-------UGCgCCCGCGgUUG- -5'
5602 5' -66 NC_001806.1 + 131469 0.66 0.4537
Target:  5'- cCGGCGGCGCuguugCCGgaACGCaccgaGGgGCCAAg -3'
miRNA:   3'- -GCCGCCGCG-----GGC--UGCGc----CCgCGGUUg -5'
5602 5' -66 NC_001806.1 + 129331 0.66 0.445169
Target:  5'- aGGUGGaaaGCCUucaucGCGUGGGCcCCAACc -3'
miRNA:   3'- gCCGCCg--CGGGc----UGCGCCCGcGGUUG- -5'
5602 5' -66 NC_001806.1 + 119031 0.66 0.445169
Target:  5'- uGGCGGCGCUgcgccuugCGugGggcuCGGGgGCgAGCu -3'
miRNA:   3'- gCCGCCGCGG--------GCugC----GCCCgCGgUUG- -5'
5602 5' -66 NC_001806.1 + 141426 0.66 0.497622
Target:  5'- gGGCGGCGCgCGGCcaaccgGCGGauaacucCGCCcACg -3'
miRNA:   3'- gCCGCCGCGgGCUG------CGCCc------GCGGuUG- -5'
5602 5' -66 NC_001806.1 + 55988 0.66 0.46232
Target:  5'- gGGUGuGCGUUCGAUGCGGccucccgaccaaGCGCCcuCg -3'
miRNA:   3'- gCCGC-CGCGGGCUGCGCC------------CGCGGuuG- -5'
5602 5' -66 NC_001806.1 + 24305 0.66 0.445169
Target:  5'- cCGGCGGCGCgggaCCuGCGCcgcacGGUGCUGGCc -3'
miRNA:   3'- -GCCGCCGCG----GGcUGCGc----CCGCGGUUG- -5'
5602 5' -66 NC_001806.1 + 26969 0.66 0.46232
Target:  5'- uGGC-GCGCCgCGGCucGUGGGCccgcgagcggGCCGACc -3'
miRNA:   3'- gCCGcCGCGG-GCUG--CGCCCG----------CGGUUG- -5'
5602 5' -66 NC_001806.1 + 127937 0.66 0.4537
Target:  5'- aGGCGGCGaCCagGGCGaGGGCgacGCgGACu -3'
miRNA:   3'- gCCGCCGC-GGg-CUGCgCCCG---CGgUUG- -5'
5602 5' -66 NC_001806.1 + 38065 0.66 0.445169
Target:  5'- --aCGGCGUCCGcCGCGGGCagGCUGGg -3'
miRNA:   3'- gccGCCGCGGGCuGCGCCCG--CGGUUg -5'
5602 5' -66 NC_001806.1 + 132687 0.66 0.445169
Target:  5'- uGGgGGCcugGCCCG-CgGUGGGgGCCAGg -3'
miRNA:   3'- gCCgCCG---CGGGCuG-CGCCCgCGGUUg -5'
5602 5' -66 NC_001806.1 + 6049 0.66 0.4537
Target:  5'- uGGCGccGUGCCCGACucc-GCGCCGGCc -3'
miRNA:   3'- gCCGC--CGCGGGCUGcgccCGCGGUUG- -5'
5602 5' -66 NC_001806.1 + 106852 0.66 0.4537
Target:  5'- -cGCGGaGUUUuucucggggGACGCGGGCGCCGAg -3'
miRNA:   3'- gcCGCCgCGGG---------CUGCGCCCGCGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.