miRNA display CGI


Results 21 - 40 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 5' -66 NC_001806.1 + 37989 0.66 0.479812
Target:  5'- uGGgGGCaCgCCGGCGgGGGU-CCGACa -3'
miRNA:   3'- gCCgCCGcG-GGCUGCgCCCGcGGUUG- -5'
5602 5' -66 NC_001806.1 + 92249 0.66 0.459725
Target:  5'- gCGGCGGCGCgUGAUGgacauguuuaacaaCGGGUuucugucgGCCAAa -3'
miRNA:   3'- -GCCGCCGCGgGCUGC--------------GCCCG--------CGGUUg -5'
5602 5' -66 NC_001806.1 + 74509 0.66 0.46232
Target:  5'- gCGGCGcuucgaCGCCCuaGAUGCGGcccuGgGCCAGCa -3'
miRNA:   3'- -GCCGCc-----GCGGG--CUGCGCC----CgCGGUUG- -5'
5602 5' -66 NC_001806.1 + 2299 0.66 0.479812
Target:  5'- cCGGCGGCcccCCCGAgGCcccGCcGCCGGCc -3'
miRNA:   3'- -GCCGCCGc--GGGCUgCGcc-CG-CGGUUG- -5'
5602 5' -66 NC_001806.1 + 146762 0.66 0.4537
Target:  5'- aGGCuGUuccacUCCGACGCGGGgGCCGu- -3'
miRNA:   3'- gCCGcCGc----GGGCUGCGCCCgCGGUug -5'
5602 5' -66 NC_001806.1 + 129331 0.66 0.445169
Target:  5'- aGGUGGaaaGCCUucaucGCGUGGGCcCCAACc -3'
miRNA:   3'- gCCGCCg--CGGGc----UGCGCCCGcGGUUG- -5'
5602 5' -66 NC_001806.1 + 100880 0.66 0.479812
Target:  5'- aGGCGcCGCCCGAuCGCGcacagcgcgacGuGCGCgAACa -3'
miRNA:   3'- gCCGCcGCGGGCU-GCGC-----------C-CGCGgUUG- -5'
5602 5' -66 NC_001806.1 + 152080 0.66 0.471024
Target:  5'- gCGcGCGcGCGCCCG-CGgGGG-GCCcgGGCu -3'
miRNA:   3'- -GC-CGC-CGCGGGCuGCgCCCgCGG--UUG- -5'
5602 5' -66 NC_001806.1 + 99725 0.66 0.46232
Target:  5'- aGGgGGCGCUgUGugGUGGGgGgCGAUa -3'
miRNA:   3'- gCCgCCGCGG-GCugCGCCCgCgGUUG- -5'
5602 5' -66 NC_001806.1 + 113092 0.66 0.4537
Target:  5'- uGGCGGC-CCCGGC-CGGcccCGCCGcagACa -3'
miRNA:   3'- gCCGCCGcGGGCUGcGCCc--GCGGU---UG- -5'
5602 5' -66 NC_001806.1 + 21869 0.66 0.46232
Target:  5'- gCGGCGGCGaggaccCCCGcggccucCGCGGGcCGCaucgAGCg -3'
miRNA:   3'- -GCCGCCGC------GGGCu------GCGCCC-GCGg---UUG- -5'
5602 5' -66 NC_001806.1 + 37789 0.66 0.479812
Target:  5'- gGGcCGGgGCgCGGgggucCGCGGGCgggggggcaaucGCCAGCg -3'
miRNA:   3'- gCC-GCCgCGgGCU-----GCGCCCG------------CGGUUG- -5'
5602 5' -66 NC_001806.1 + 33984 0.66 0.44432
Target:  5'- cCGGgGGuCGCCgGggcagggGCGgGGGCGUgGGCg -3'
miRNA:   3'- -GCCgCC-GCGGgC-------UGCgCCCGCGgUUG- -5'
5602 5' -66 NC_001806.1 + 141426 0.66 0.497622
Target:  5'- gGGCGGCGCgCGGCcaaccgGCGGauaacucCGCCcACg -3'
miRNA:   3'- gCCGCCGCGgGCUG------CGCCc------GCGGuUG- -5'
5602 5' -66 NC_001806.1 + 95504 0.66 0.471024
Target:  5'- aCGGCGGCuguacgcggaccGCCUGACgaaGCGGucGUugGCCAGCc -3'
miRNA:   3'- -GCCGCCG------------CGGGCUG---CGCC--CG--CGGUUG- -5'
5602 5' -66 NC_001806.1 + 21975 0.66 0.471024
Target:  5'- cCGGCGGgucgagcuggaCG-CCGACGCGaccuccGGCGCCuucuACg -3'
miRNA:   3'- -GCCGCC-----------GCgGGCUGCGC------CCGCGGu---UG- -5'
5602 5' -66 NC_001806.1 + 74950 0.66 0.461454
Target:  5'- aCGGCGGCGCUgCGGgcggacaUGUGGGgGCUg-- -3'
miRNA:   3'- -GCCGCCGCGG-GCU-------GCGCCCgCGGuug -5'
5602 5' -66 NC_001806.1 + 94797 0.66 0.445169
Target:  5'- uGcGCuGGC-CCgGACGCGGGgGgCGACg -3'
miRNA:   3'- gC-CG-CCGcGGgCUGCGCCCgCgGUUG- -5'
5602 5' -66 NC_001806.1 + 5941 0.66 0.479812
Target:  5'- gGGCGGgacCGCCCcaagGGgGCGGGgcCGCCGGg -3'
miRNA:   3'- gCCGCC---GCGGG----CUgCGCCC--GCGGUUg -5'
5602 5' -66 NC_001806.1 + 119031 0.66 0.445169
Target:  5'- uGGCGGCGCUgcgccuugCGugGggcuCGGGgGCgAGCu -3'
miRNA:   3'- gCCGCCGCGG--------GCugC----GCCCgCGgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.