miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 5' -66 NC_001806.1 + 114350 1.08 0.000443
Target:  5'- uCGGCGGCGCCCGACGCGGGCGCCAACa -3'
miRNA:   3'- -GCCGCCGCGGGCUGCGCCCGCGGUUG- -5'
5602 5' -66 NC_001806.1 + 136995 0.87 0.018465
Target:  5'- uGGCGGCGgCCGGCGgGGaGCGCCAGCu -3'
miRNA:   3'- gCCGCCGCgGGCUGCgCC-CGCGGUUG- -5'
5602 5' -66 NC_001806.1 + 148165 0.82 0.040828
Target:  5'- gCGGCGGCGCCUcugcgugggggGGCGCgGGGCGuCCGGCg -3'
miRNA:   3'- -GCCGCCGCGGG-----------CUGCG-CCCGC-GGUUG- -5'
5602 5' -66 NC_001806.1 + 4443 0.8 0.053955
Target:  5'- gGGCGGCGUCCGccCGgGGGCuGCCGGCg -3'
miRNA:   3'- gCCGCCGCGGGCu-GCgCCCG-CGGUUG- -5'
5602 5' -66 NC_001806.1 + 21773 0.79 0.069384
Target:  5'- gGGCGGgGUCCGucgaGCGcGGCGCCGGCa -3'
miRNA:   3'- gCCGCCgCGGGCug--CGC-CCGCGGUUG- -5'
5602 5' -66 NC_001806.1 + 3478 0.78 0.072944
Target:  5'- gGcGCGGCGCCCGGCGuCGucgucGGCGUCGGCg -3'
miRNA:   3'- gC-CGCCGCGGGCUGC-GC-----CCGCGGUUG- -5'
5602 5' -66 NC_001806.1 + 147646 0.78 0.076679
Target:  5'- aCGGCGcGCGUCCGcgGgGCGGGCGgCCGGCu -3'
miRNA:   3'- -GCCGC-CGCGGGC--UgCGCCCGC-GGUUG- -5'
5602 5' -66 NC_001806.1 + 3020 0.78 0.082422
Target:  5'- uCGGCGGCGUCCGguGCGCuGGCcgccgccGCCAGCa -3'
miRNA:   3'- -GCCGCCGCGGGC--UGCGcCCG-------CGGUUG- -5'
5602 5' -66 NC_001806.1 + 95310 0.78 0.082627
Target:  5'- gCGGCGgacGCGCCCaagggcGGCGCGGGCcCCGACg -3'
miRNA:   3'- -GCCGC---CGCGGG------CUGCGCCCGcGGUUG- -5'
5602 5' -66 NC_001806.1 + 95658 0.77 0.08662
Target:  5'- gCGGCGcgcgcgcgcuucuGCGCCCuGACgGCGGGCGCgGGCa -3'
miRNA:   3'- -GCCGC-------------CGCGGG-CUG-CGCCCGCGgUUG- -5'
5602 5' -66 NC_001806.1 + 4347 0.77 0.091246
Target:  5'- cCGGCGGCGCUCGAUGCGGccCGCgGAg -3'
miRNA:   3'- -GCCGCCGCGGGCUGCGCCc-GCGgUUg -5'
5602 5' -66 NC_001806.1 + 42637 0.77 0.095869
Target:  5'- gCGGCGGCGUcgcguCCGGUGCGGGgGCUGGCg -3'
miRNA:   3'- -GCCGCCGCG-----GGCUGCGCCCgCGGUUG- -5'
5602 5' -66 NC_001806.1 + 46093 0.77 0.098262
Target:  5'- gGGCGGUuuuguccgGCCCGgggccuGCGCGGGCGCCu-- -3'
miRNA:   3'- gCCGCCG--------CGGGC------UGCGCCCGCGGuug -5'
5602 5' -66 NC_001806.1 + 151531 0.76 0.100712
Target:  5'- gGGaCGGCGCCCGugGgccCGGGCgGCCGGg -3'
miRNA:   3'- gCC-GCCGCGGGCugC---GCCCG-CGGUUg -5'
5602 5' -66 NC_001806.1 + 72677 0.76 0.108413
Target:  5'- aGGCcaaGCGCCCGAauCGGGCGcCCGACg -3'
miRNA:   3'- gCCGc--CGCGGGCUgcGCCCGC-GGUUG- -5'
5602 5' -66 NC_001806.1 + 34316 0.76 0.113849
Target:  5'- gGGCGGCGCgCCgGACG-GGGCGCUGGa -3'
miRNA:   3'- gCCGCCGCG-GG-CUGCgCCCGCGGUUg -5'
5602 5' -66 NC_001806.1 + 4939 0.76 0.116662
Target:  5'- cCGGCgucGGUGCCCGcCGCGGGgGCCc-- -3'
miRNA:   3'- -GCCG---CCGCGGGCuGCGCCCgCGGuug -5'
5602 5' -66 NC_001806.1 + 51249 0.76 0.116662
Target:  5'- gGGCGucaccaugcaGCGCCgGACGCGcGGCGCgAGCu -3'
miRNA:   3'- gCCGC----------CGCGGgCUGCGC-CCGCGgUUG- -5'
5602 5' -66 NC_001806.1 + 142150 0.75 0.122484
Target:  5'- uGGCGGCGuCCCGuCGCGgGGUGggguCCGACg -3'
miRNA:   3'- gCCGCCGC-GGGCuGCGC-CCGC----GGUUG- -5'
5602 5' -66 NC_001806.1 + 103021 0.75 0.138236
Target:  5'- uCGGCGGCGgCCGccgccgucuccaGCGCcuccaGGGCGCCuGCg -3'
miRNA:   3'- -GCCGCCGCgGGC------------UGCG-----CCCGCGGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.