miRNA display CGI


Results 1 - 20 of 250 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 5' -66 NC_001806.1 + 152080 0.66 0.471024
Target:  5'- gCGcGCGcGCGCCCG-CGgGGG-GCCcgGGCu -3'
miRNA:   3'- -GC-CGC-CGCGGGCuGCgCCCgCGG--UUG- -5'
5602 5' -66 NC_001806.1 + 151563 0.68 0.380348
Target:  5'- gCGGCGGgGgCCG-CGauGGCGgCGGCg -3'
miRNA:   3'- -GCCGCCgCgGGCuGCgcCCGCgGUUG- -5'
5602 5' -66 NC_001806.1 + 151531 0.76 0.100712
Target:  5'- gGGaCGGCGCCCGugGgccCGGGCgGCCGGg -3'
miRNA:   3'- gCC-GCCGCGGGCugC---GCCCG-CGGUUg -5'
5602 5' -66 NC_001806.1 + 151451 0.71 0.247785
Target:  5'- gCGGCGGCGgggCGGcCGCGGGCGCg--- -3'
miRNA:   3'- -GCCGCCGCgg-GCU-GCGCCCGCGguug -5'
5602 5' -66 NC_001806.1 + 151303 0.7 0.270865
Target:  5'- gCGGCGGUggGCCgGGCcuCuGGCGCCGGCu -3'
miRNA:   3'- -GCCGCCG--CGGgCUGc-GcCCGCGGUUG- -5'
5602 5' -66 NC_001806.1 + 151033 0.68 0.35772
Target:  5'- aGGUGGCGCaCCcgGACGUGgGGCGagaAGCg -3'
miRNA:   3'- gCCGCCGCG-GG--CUGCGC-CCGCgg-UUG- -5'
5602 5' -66 NC_001806.1 + 150995 0.7 0.289287
Target:  5'- -cGCGGCGCgCC-AgGCGGGCgGCCGAg -3'
miRNA:   3'- gcCGCCGCG-GGcUgCGCCCG-CGGUUg -5'
5602 5' -66 NC_001806.1 + 150168 0.66 0.46232
Target:  5'- aCGGCccGGCcCCCGAuuUGgGGGC-CCAACc -3'
miRNA:   3'- -GCCG--CCGcGGGCU--GCgCCCGcGGUUG- -5'
5602 5' -66 NC_001806.1 + 149763 0.66 0.492247
Target:  5'- uGGCgccccagacauGGCGCCCGGCcccucaccucgcgcuGgGGGCggcccucagGCCGGCg -3'
miRNA:   3'- gCCG-----------CCGCGGGCUG---------------CgCCCG---------CGGUUG- -5'
5602 5' -66 NC_001806.1 + 148165 0.82 0.040828
Target:  5'- gCGGCGGCGCCUcugcgugggggGGCGCgGGGCGuCCGGCg -3'
miRNA:   3'- -GCCGCCGCGGG-----------CUGCG-CCCGC-GGUUG- -5'
5602 5' -66 NC_001806.1 + 148000 0.67 0.41197
Target:  5'- -cGCGGCGCCgCGGCucgcgacugGCGGGaGCCGc- -3'
miRNA:   3'- gcCGCCGCGG-GCUG---------CGCCCgCGGUug -5'
5602 5' -66 NC_001806.1 + 147800 0.74 0.141601
Target:  5'- gGGCGGaGCCUGGCaUGGGCGCCGc- -3'
miRNA:   3'- gCCGCCgCGGGCUGcGCCCGCGGUug -5'
5602 5' -66 NC_001806.1 + 147751 0.75 0.138236
Target:  5'- gGGCGcGCGgguCCCGACGCGGcCGCgGACg -3'
miRNA:   3'- gCCGC-CGC---GGGCUGCGCCcGCGgUUG- -5'
5602 5' -66 NC_001806.1 + 147714 0.74 0.15958
Target:  5'- aGGCGGCGCUCGcACGCacGGG-GCCAc- -3'
miRNA:   3'- gCCGCCGCGGGC-UGCG--CCCgCGGUug -5'
5602 5' -66 NC_001806.1 + 147646 0.78 0.076679
Target:  5'- aCGGCGcGCGUCCGcgGgGCGGGCGgCCGGCu -3'
miRNA:   3'- -GCCGC-CGCGGGC--UgCGCCCGC-GGUUG- -5'
5602 5' -66 NC_001806.1 + 147495 0.74 0.15958
Target:  5'- gGGCGGCGCCgGAgGgGGcgGCGCCGc- -3'
miRNA:   3'- gCCGCCGCGGgCUgCgCC--CGCGGUug -5'
5602 5' -66 NC_001806.1 + 147225 0.7 0.289287
Target:  5'- aGGCGGCcCCCG-CGgGGGUcgggGCCGAg -3'
miRNA:   3'- gCCGCCGcGGGCuGCgCCCG----CGGUUg -5'
5602 5' -66 NC_001806.1 + 146762 0.66 0.4537
Target:  5'- aGGCuGUuccacUCCGACGCGGGgGCCGu- -3'
miRNA:   3'- gCCGcCGc----GGGCUGCGCCCgCGGUug -5'
5602 5' -66 NC_001806.1 + 144953 0.69 0.322149
Target:  5'- aCGGcCGGCcCCCGugGCggcccggcccgGGGCcCCGGCg -3'
miRNA:   3'- -GCC-GCCGcGGGCugCG-----------CCCGcGGUUG- -5'
5602 5' -66 NC_001806.1 + 142150 0.75 0.122484
Target:  5'- uGGCGGCGuCCCGuCGCGgGGUGggguCCGACg -3'
miRNA:   3'- gCCGCCGC-GGGCuGCGC-CCGC----GGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.