miRNA display CGI


Results 21 - 40 of 250 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 5' -66 NC_001806.1 + 100880 0.66 0.479812
Target:  5'- aGGCGcCGCCCGAuCGCGcacagcgcgacGuGCGCgAACa -3'
miRNA:   3'- gCCGCcGCGGGCU-GCGC-----------C-CGCGgUUG- -5'
5602 5' -66 NC_001806.1 + 95116 0.66 0.479812
Target:  5'- uGGCGGCGCUgGAUaugGUGGaCGCCc-- -3'
miRNA:   3'- gCCGCCGCGGgCUG---CGCCcGCGGuug -5'
5602 5' -66 NC_001806.1 + 37989 0.66 0.479812
Target:  5'- uGGgGGCaCgCCGGCGgGGGU-CCGACa -3'
miRNA:   3'- gCCgCCGcG-GGCUGCgCCCGcGGUUG- -5'
5602 5' -66 NC_001806.1 + 5941 0.66 0.479812
Target:  5'- gGGCGGgacCGCCCcaagGGgGCGGGgcCGCCGGg -3'
miRNA:   3'- gCCGCC---GCGGG----CUgCGCCC--GCGGUUg -5'
5602 5' -66 NC_001806.1 + 129087 0.66 0.479812
Target:  5'- aCGGCcaGGUGCgUGACuGUGGuccgcGCGCCAAUg -3'
miRNA:   3'- -GCCG--CCGCGgGCUG-CGCC-----CGCGGUUG- -5'
5602 5' -66 NC_001806.1 + 112432 0.66 0.479812
Target:  5'- gGGCGGcCGgUCGACG-GGGUGCUc-- -3'
miRNA:   3'- gCCGCC-GCgGGCUGCgCCCGCGGuug -5'
5602 5' -66 NC_001806.1 + 19062 0.66 0.47453
Target:  5'- gGGCcuGGCGCaCCGAgCGCcguagcauugcauuuGGGCuugggGCCGACg -3'
miRNA:   3'- gCCG--CCGCG-GGCU-GCG---------------CCCG-----CGGUUG- -5'
5602 5' -66 NC_001806.1 + 152080 0.66 0.471024
Target:  5'- gCGcGCGcGCGCCCG-CGgGGG-GCCcgGGCu -3'
miRNA:   3'- -GC-CGC-CGCGGGCuGCgCCCgCGG--UUG- -5'
5602 5' -66 NC_001806.1 + 6081 0.66 0.471024
Target:  5'- gGGCGG-GCCCgGGCgGCGGGgGgCGGg -3'
miRNA:   3'- gCCGCCgCGGG-CUG-CGCCCgCgGUUg -5'
5602 5' -66 NC_001806.1 + 65170 0.66 0.471024
Target:  5'- uCGGacgacCGGuCGUCCGAgacgaacucCGCGGG-GCCGACu -3'
miRNA:   3'- -GCC-----GCC-GCGGGCU---------GCGCCCgCGGUUG- -5'
5602 5' -66 NC_001806.1 + 95504 0.66 0.471024
Target:  5'- aCGGCGGCuguacgcggaccGCCUGACgaaGCGGucGUugGCCAGCc -3'
miRNA:   3'- -GCCGCCG------------CGGGCUG---CGCC--CG--CGGUUG- -5'
5602 5' -66 NC_001806.1 + 109283 0.66 0.471024
Target:  5'- uCGGUGuuGUuuGGCG-GaGGCGCCGGCg -3'
miRNA:   3'- -GCCGCcgCGggCUGCgC-CCGCGGUUG- -5'
5602 5' -66 NC_001806.1 + 21975 0.66 0.471024
Target:  5'- cCGGCGGgucgagcuggaCG-CCGACGCGaccuccGGCGCCuucuACg -3'
miRNA:   3'- -GCCGCC-----------GCgGGCUGCGC------CCGCGGu---UG- -5'
5602 5' -66 NC_001806.1 + 370 0.66 0.471024
Target:  5'- gCGcGCGcGCGCCCG-CGgGGG-GCCcgGGCu -3'
miRNA:   3'- -GC-CGC-CGCGGGCuGCgCCCgCGG--UUG- -5'
5602 5' -66 NC_001806.1 + 150168 0.66 0.46232
Target:  5'- aCGGCccGGCcCCCGAuuUGgGGGC-CCAACc -3'
miRNA:   3'- -GCCG--CCGcGGGCU--GCgCCCGcGGUUG- -5'
5602 5' -66 NC_001806.1 + 74509 0.66 0.46232
Target:  5'- gCGGCGcuucgaCGCCCuaGAUGCGGcccuGgGCCAGCa -3'
miRNA:   3'- -GCCGCc-----GCGGG--CUGCGCC----CgCGGUUG- -5'
5602 5' -66 NC_001806.1 + 101031 0.66 0.46232
Target:  5'- -cGCGGCGCUCGAaaauCGCa-GCGCUGGCg -3'
miRNA:   3'- gcCGCCGCGGGCU----GCGccCGCGGUUG- -5'
5602 5' -66 NC_001806.1 + 129655 0.66 0.46232
Target:  5'- aGGCugcccuGCGCCCGcC-CGGGCcGCCGAg -3'
miRNA:   3'- gCCGc-----CGCGGGCuGcGCCCG-CGGUUg -5'
5602 5' -66 NC_001806.1 + 99725 0.66 0.46232
Target:  5'- aGGgGGCGCUgUGugGUGGGgGgCGAUa -3'
miRNA:   3'- gCCgCCGCGG-GCugCGCCCgCgGUUG- -5'
5602 5' -66 NC_001806.1 + 21869 0.66 0.46232
Target:  5'- gCGGCGGCGaggaccCCCGcggccucCGCGGGcCGCaucgAGCg -3'
miRNA:   3'- -GCCGCCGC------GGGCu------GCGCCC-GCGg---UUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.