miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5604 5' -61.4 NC_001806.1 + 30387 0.66 0.649338
Target:  5'- -cCGGGCGcgugcgacgguGGCGCGcggcucgggggGGCCGGGCgUGGAg -3'
miRNA:   3'- ccGCCCGU-----------CCGCGU-----------UCGGCUCG-ACUU- -5'
5604 5' -61.4 NC_001806.1 + 1492 0.66 0.6393
Target:  5'- aGCGGGgGGGCGUcgucGUCGGGCUc-- -3'
miRNA:   3'- cCGCCCgUCCGCGuu--CGGCUCGAcuu -5'
5604 5' -61.4 NC_001806.1 + 4671 0.66 0.6393
Target:  5'- cGGCGGGCGcGGCGaCAGGCgGucCgUGGGg -3'
miRNA:   3'- -CCGCCCGU-CCGC-GUUCGgCucG-ACUU- -5'
5604 5' -61.4 NC_001806.1 + 23278 0.66 0.629256
Target:  5'- cGCGGGagGGGCGCAAGCgcaaGAGUc--- -3'
miRNA:   3'- cCGCCCg-UCCGCGUUCGg---CUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 37765 0.66 0.619215
Target:  5'- cGGC-GGCGGGCGCcuuucgcuccgGGGCCgGGGCgcgGGGg -3'
miRNA:   3'- -CCGcCCGUCCGCG-----------UUCGG-CUCGa--CUU- -5'
5604 5' -61.4 NC_001806.1 + 38821 0.66 0.619215
Target:  5'- gGGCgGGGguGGauaCGCuGGCUGGGUUGGu -3'
miRNA:   3'- -CCG-CCCguCC---GCGuUCGGCUCGACUu -5'
5604 5' -61.4 NC_001806.1 + 95076 0.66 0.616204
Target:  5'- cGGCGGGCGGagcauuucgaucGCGCGuucgggagccaccuGGCgGcGCUGGAu -3'
miRNA:   3'- -CCGCCCGUC------------CGCGU--------------UCGgCuCGACUU- -5'
5604 5' -61.4 NC_001806.1 + 83260 0.66 0.609183
Target:  5'- gGGgGGGCGGGCGaCGgaggggguucGGgCGGGCgcgGAGg -3'
miRNA:   3'- -CCgCCCGUCCGC-GU----------UCgGCUCGa--CUU- -5'
5604 5' -61.4 NC_001806.1 + 4437 0.67 0.589176
Target:  5'- gGGCGGGgGcGGCGUccGCCcggGGGCUGc- -3'
miRNA:   3'- -CCGCCCgU-CCGCGuuCGG---CUCGACuu -5'
5604 5' -61.4 NC_001806.1 + 89281 0.67 0.589176
Target:  5'- gGGCcGGCGGGCGCAAaaaacccggacGCCGccCUGGc -3'
miRNA:   3'- -CCGcCCGUCCGCGUU-----------CGGCucGACUu -5'
5604 5' -61.4 NC_001806.1 + 45295 0.67 0.589176
Target:  5'- cGCGGGCccGCGCGgggAGCCGcccGGCgagGAGg -3'
miRNA:   3'- cCGCCCGucCGCGU---UCGGC---UCGa--CUU- -5'
5604 5' -61.4 NC_001806.1 + 3549 0.67 0.589176
Target:  5'- aGGCGGGCGcGGCGgAcAGCCGccccagggcGGCgagGAu -3'
miRNA:   3'- -CCGCCCGU-CCGCgU-UCGGC---------UCGa--CUu -5'
5604 5' -61.4 NC_001806.1 + 36211 0.67 0.589176
Target:  5'- cGCGGGC-GGC-CAuGCCgcugGAGCUGAu -3'
miRNA:   3'- cCGCCCGuCCGcGUuCGG----CUCGACUu -5'
5604 5' -61.4 NC_001806.1 + 85994 0.67 0.583195
Target:  5'- cGGCaGGCgacggcgucucccggGGGCGCuuGGCCGGGgaGGg -3'
miRNA:   3'- -CCGcCCG---------------UCCGCGu-UCGGCUCgaCUu -5'
5604 5' -61.4 NC_001806.1 + 23131 0.67 0.579214
Target:  5'- cGCGGGaCccGCGCcuGCCGAGCUc-- -3'
miRNA:   3'- cCGCCC-GucCGCGuuCGGCUCGAcuu -5'
5604 5' -61.4 NC_001806.1 + 52636 0.67 0.579214
Target:  5'- aGCGGGCGcGGCGCGAcaaCGAGCc--- -3'
miRNA:   3'- cCGCCCGU-CCGCGUUcg-GCUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 24048 0.67 0.579214
Target:  5'- gGGCGGGCAauuggaccGGCGCccccgacguGUCGGcGCUGGg -3'
miRNA:   3'- -CCGCCCGU--------CCGCGuu-------CGGCU-CGACUu -5'
5604 5' -61.4 NC_001806.1 + 148089 0.67 0.569288
Target:  5'- gGGCGccgaGGgGGGCGCuguccGAGCCGcggccGGCUGGGg -3'
miRNA:   3'- -CCGC----CCgUCCGCG-----UUCGGC-----UCGACUU- -5'
5604 5' -61.4 NC_001806.1 + 10113 0.67 0.559405
Target:  5'- cGCGGcGCAcGGCGCGucGGCCGGGgacagacauuCUGGGa -3'
miRNA:   3'- cCGCC-CGU-CCGCGU--UCGGCUC----------GACUU- -5'
5604 5' -61.4 NC_001806.1 + 34418 0.67 0.559405
Target:  5'- nGGcCGGGcCGGGC-CGGGCCGGGUgGGc -3'
miRNA:   3'- -CC-GCCC-GUCCGcGUUCGGCUCGaCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.