Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5606 | 3' | -62.4 | NC_001806.1 | + | 112236 | 1.07 | 0.001009 |
Target: 5'- gGACAACGGCCGCCUGGCCACCAGGGUg -3' miRNA: 3'- -CUGUUGCCGGCGGACCGGUGGUCCCA- -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 58332 | 0.79 | 0.098202 |
Target: 5'- uGGCGuugGCGGCCGCCUGGCcCGCCuuGGUg -3' miRNA: 3'- -CUGU---UGCCGGCGGACCG-GUGGucCCA- -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 92898 | 0.77 | 0.139855 |
Target: 5'- aGGCuGCGGCCGCgUGGuCCGCgCAGGGc -3' miRNA: 3'- -CUGuUGCCGGCGgACC-GGUG-GUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 30738 | 0.76 | 0.146991 |
Target: 5'- cGCGGgGGCCGCCUcuuccGCCGCCGGGGc -3' miRNA: 3'- cUGUUgCCGGCGGAc----CGGUGGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 50255 | 0.75 | 0.183355 |
Target: 5'- ----cCGGCCGCaugacguacCUGGCCACCGGGGc -3' miRNA: 3'- cuguuGCCGGCG---------GACCGGUGGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 103022 | 0.75 | 0.197144 |
Target: 5'- cGGCGGCGGCCGCCgccgucuccaGcGCCuCCAGGGc -3' miRNA: 3'- -CUGUUGCCGGCGGa---------C-CGGuGGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 22107 | 0.74 | 0.216931 |
Target: 5'- gGGCGACaGCCGCCcgGGCCuCUGGGGg -3' miRNA: 3'- -CUGUUGcCGGCGGa-CCGGuGGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 22452 | 0.73 | 0.244028 |
Target: 5'- cGCGGCGGCCGCCgUGGCCAUgAGc-- -3' miRNA: 3'- cUGUUGCCGGCGG-ACCGGUGgUCcca -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 61431 | 0.73 | 0.249774 |
Target: 5'- -uCGAUGGCCGCCaGcGCCGCCGGGc- -3' miRNA: 3'- cuGUUGCCGGCGGaC-CGGUGGUCCca -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 29972 | 0.72 | 0.299815 |
Target: 5'- cGCGGgGGgCGUCUGGCCccuCCGGGGg -3' miRNA: 3'- cUGUUgCCgGCGGACCGGu--GGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 53862 | 0.72 | 0.290527 |
Target: 5'- cGACGGCGGCCagcuguuuggcaGCCgcgcggggaucagGGUCGCCGGGGc -3' miRNA: 3'- -CUGUUGCCGG------------CGGa------------CCGGUGGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 2662 | 0.72 | 0.289219 |
Target: 5'- gGGCGGCGGCCGCggGcGCCGCCguguggcugggccccGGGGg -3' miRNA: 3'- -CUGUUGCCGGCGgaC-CGGUGG---------------UCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 50682 | 0.72 | 0.286616 |
Target: 5'- cGCGGCGGCCacgcgcGCCauucUGGCCGCCGGGc- -3' miRNA: 3'- cUGUUGCCGG------CGG----ACCGGUGGUCCca -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 88066 | 0.72 | 0.280191 |
Target: 5'- cGugGGCaGGCC-CCUGGCCGCCAGcucguucaGGUg -3' miRNA: 3'- -CugUUG-CCGGcGGACCGGUGGUC--------CCA- -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 120864 | 0.72 | 0.27388 |
Target: 5'- cGGCGGCcccuggcGCCGCCUGGuCCcCCGGGGa -3' miRNA: 3'- -CUGUUGc------CGGCGGACC-GGuGGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 23060 | 0.72 | 0.267684 |
Target: 5'- cGGCAGCgaGGCCGCCgUGGCCGCCGu--- -3' miRNA: 3'- -CUGUUG--CCGGCGG-ACCGGUGGUccca -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 34399 | 0.71 | 0.306588 |
Target: 5'- gGGCGGCGGUgGCCgGGCCggGCCGGGc- -3' miRNA: 3'- -CUGUUGCCGgCGGaCCGG--UGGUCCca -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 5093 | 0.71 | 0.313478 |
Target: 5'- gGGCGGCGGcCCGUCgguggGGCCcggggaGCCGGGGc -3' miRNA: 3'- -CUGUUGCC-GGCGGa----CCGG------UGGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 9173 | 0.71 | 0.313478 |
Target: 5'- aGACAACGGCCGUgUaGCC-CgGGGGUc -3' miRNA: 3'- -CUGUUGCCGGCGgAcCGGuGgUCCCA- -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 132183 | 0.71 | 0.320485 |
Target: 5'- uGGCGugGGCgCGCCUGGCgGCCAu--- -3' miRNA: 3'- -CUGUugCCG-GCGGACCGgUGGUccca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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