miRNA display CGI


Results 21 - 40 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5606 3' -62.4 NC_001806.1 + 23777 0.66 0.6159
Target:  5'- cGAUAACccccacccccacggGGCCGCCgggGGCCGCCucuuuGGc- -3'
miRNA:   3'- -CUGUUG--------------CCGGCGGa--CCGGUGGu----CCca -5'
5606 3' -62.4 NC_001806.1 + 67160 0.66 0.628764
Target:  5'- --gGGCGGUCGCCuccaucagcUGGCC-CCAGGc- -3'
miRNA:   3'- cugUUGCCGGCGG---------ACCGGuGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 2702 0.66 0.628764
Target:  5'- nGGCuGCcGCCGCCa-GCCGcCCAGGGg -3'
miRNA:   3'- -CUGuUGcCGGCGGacCGGU-GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 29099 0.66 0.618867
Target:  5'- aGACGG-GGCUGCUggGGCCG-CAGGGc -3'
miRNA:   3'- -CUGUUgCCGGCGGa-CCGGUgGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 98009 0.66 0.618867
Target:  5'- -cCAACGccaUCGCCUcGGCCACCGuGGGc -3'
miRNA:   3'- cuGUUGCc--GGCGGA-CCGGUGGU-CCCa -5'
5606 3' -62.4 NC_001806.1 + 126286 0.66 0.628764
Target:  5'- gGACAuucACGGCUaCCUGGCC-CCAGu-- -3'
miRNA:   3'- -CUGU---UGCCGGcGGACCGGuGGUCcca -5'
5606 3' -62.4 NC_001806.1 + 151532 0.67 0.540577
Target:  5'- gGACGGCGcCCguggGCCcgGGCgGCCGGGGg -3'
miRNA:   3'- -CUGUUGCcGG----CGGa-CCGgUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 103151 0.67 0.512011
Target:  5'- gGGCAGCGGCaGCCgcugugcgcugGGCCugUAGGa- -3'
miRNA:   3'- -CUGUUGCCGgCGGa----------CCGGugGUCCca -5'
5606 3' -62.4 NC_001806.1 + 33778 0.67 0.512011
Target:  5'- uGCGGCGGCCGCCguguucGGUCucgguagccgGCCGgcGGGUg -3'
miRNA:   3'- cUGUUGCCGGCGGa-----CCGG----------UGGU--CCCA- -5'
5606 3' -62.4 NC_001806.1 + 3384 0.67 0.521467
Target:  5'- --gGACGGCCGCCaGGUCGCCGu--- -3'
miRNA:   3'- cugUUGCCGGCGGaCCGGUGGUccca -5'
5606 3' -62.4 NC_001806.1 + 9983 0.67 0.530991
Target:  5'- uGACGGaGGCCGCCUGccacGCCAgccCCGGGa- -3'
miRNA:   3'- -CUGUUgCCGGCGGAC----CGGU---GGUCCca -5'
5606 3' -62.4 NC_001806.1 + 71687 0.67 0.530991
Target:  5'- cAUAAacaGGCCGggucUCUGGCCAgCAGGGc -3'
miRNA:   3'- cUGUUg--CCGGC----GGACCGGUgGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 3639 0.67 0.537695
Target:  5'- cGGCGACGGCgGCgacccccucgucauCUGcGCCggcGCCGGGGc -3'
miRNA:   3'- -CUGUUGCCGgCG--------------GAC-CGG---UGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 3799 0.67 0.521467
Target:  5'- cACGGCGGCCGCCgcgugCGCCAGGc- -3'
miRNA:   3'- cUGUUGCCGGCGGaccg-GUGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 79749 0.67 0.547321
Target:  5'- --uGGCGGCCGCCUgcccuccccgacacGGUCGCCccGGUu -3'
miRNA:   3'- cugUUGCCGGCGGA--------------CCGGUGGucCCA- -5'
5606 3' -62.4 NC_001806.1 + 4351 0.67 0.55022
Target:  5'- cGGCGcucgauGCGGcCCGCggaGGCCGCgGGGGUc -3'
miRNA:   3'- -CUGU------UGCC-GGCGga-CCGGUGgUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 32983 0.67 0.55022
Target:  5'- cGCcGgGGCCccggGCCgGGCCGCCAcGGGg -3'
miRNA:   3'- cUGuUgCCGG----CGGaCCGGUGGU-CCCa -5'
5606 3' -62.4 NC_001806.1 + 3834 0.67 0.559916
Target:  5'- aGCGGcCGGCCGCCaUGGCguaGCCcagguGGGg -3'
miRNA:   3'- cUGUU-GCCGGCGG-ACCGg--UGGu----CCCa -5'
5606 3' -62.4 NC_001806.1 + 65675 0.67 0.559916
Target:  5'- cGCuGgGGCCGCC-GGCCuccugucccccaACCGGGGc -3'
miRNA:   3'- cUGuUgCCGGCGGaCCGG------------UGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 26399 0.67 0.521467
Target:  5'- cGCGGCccccGCCGCCcccGGCCGCCcGGGc -3'
miRNA:   3'- cUGUUGc---CGGCGGa--CCGGUGGuCCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.