miRNA display CGI


Results 21 - 40 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5606 3' -62.4 NC_001806.1 + 22790 0.66 0.573567
Target:  5'- aGGC--CGGCCgcguggccgucgaguGCCUGGCCGCCugccgcGGGa -3'
miRNA:   3'- -CUGuuGCCGG---------------CGGACCGGUGGu-----CCCa -5'
5606 3' -62.4 NC_001806.1 + 22866 0.7 0.388752
Target:  5'- cGACcuGGCGGCCGUCccggGGCUgGCCGGGGc -3'
miRNA:   3'- -CUG--UUGCCGGCGGa---CCGG-UGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 23060 0.72 0.267684
Target:  5'- cGGCAGCgaGGCCGCCgUGGCCGCCGu--- -3'
miRNA:   3'- -CUGUUG--CCGGCGG-ACCGGUGGUccca -5'
5606 3' -62.4 NC_001806.1 + 23086 0.7 0.357263
Target:  5'- ---uGCGcGCCgugaGCCUGGUCGCCGGGGc -3'
miRNA:   3'- cuguUGC-CGG----CGGACCGGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 23777 0.66 0.6159
Target:  5'- cGAUAACccccacccccacggGGCCGCCgggGGCCGCCucuuuGGc- -3'
miRNA:   3'- -CUGUUG--------------CCGGCGGa--CCGGUGGu----CCca -5'
5606 3' -62.4 NC_001806.1 + 24790 0.71 0.305906
Target:  5'- cGACGACGGCCcgggggcccugccGCCgGcGCCGCCcGGGa -3'
miRNA:   3'- -CUGUUGCCGG-------------CGGaC-CGGUGGuCCCa -5'
5606 3' -62.4 NC_001806.1 + 26399 0.67 0.521467
Target:  5'- cGCGGCccccGCCGCCcccGGCCGCCcGGGc -3'
miRNA:   3'- cUGUUGc---CGGCGGa--CCGGUGGuCCCa -5'
5606 3' -62.4 NC_001806.1 + 26951 0.66 0.60898
Target:  5'- gGGCcuCGGCCGCCcgccUGGCgCGCCGcGGc -3'
miRNA:   3'- -CUGuuGCCGGCGG----ACCG-GUGGUcCCa -5'
5606 3' -62.4 NC_001806.1 + 29099 0.66 0.618867
Target:  5'- aGACGG-GGCUGCUggGGCCG-CAGGGc -3'
miRNA:   3'- -CUGUUgCCGGCGGa-CCGGUgGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 29972 0.72 0.299815
Target:  5'- cGCGGgGGgCGUCUGGCCccuCCGGGGg -3'
miRNA:   3'- cUGUUgCCgGCGGACCGGu--GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 30738 0.76 0.146991
Target:  5'- cGCGGgGGCCGCCUcuuccGCCGCCGGGGc -3'
miRNA:   3'- cUGUUgCCGGCGGAc----CGGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 32983 0.67 0.55022
Target:  5'- cGCcGgGGCCccggGCCgGGCCGCCAcGGGg -3'
miRNA:   3'- cUGuUgCCGG----CGGaCCGGUGGU-CCCa -5'
5606 3' -62.4 NC_001806.1 + 33338 0.66 0.589261
Target:  5'- cGACGccccuUGGCCGCCccGGCUGCaGGGGg -3'
miRNA:   3'- -CUGUu----GCCGGCGGa-CCGGUGgUCCCa -5'
5606 3' -62.4 NC_001806.1 + 33778 0.67 0.512011
Target:  5'- uGCGGCGGCCGCCguguucGGUCucgguagccgGCCGgcGGGUg -3'
miRNA:   3'- cUGUUGCCGGCGGa-----CCGG----------UGGU--CCCA- -5'
5606 3' -62.4 NC_001806.1 + 34399 0.71 0.306588
Target:  5'- gGGCGGCGGUgGCCgGGCCggGCCGGGc- -3'
miRNA:   3'- -CUGUUGCCGgCGGaCCGG--UGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 37765 0.69 0.448042
Target:  5'- cGGCGGCGGgCGCCUuucgcuccggGGCCgggGCgCGGGGg -3'
miRNA:   3'- -CUGUUGCCgGCGGA----------CCGG---UG-GUCCCa -5'
5606 3' -62.4 NC_001806.1 + 41360 0.67 0.521467
Target:  5'- ----cCGGCauCCaGGCCGCCAGGGg -3'
miRNA:   3'- cuguuGCCGgcGGaCCGGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 41723 0.66 0.589261
Target:  5'- gGACuGGCGGgCGCaaacgcgGGCCACCcgcGGGGg -3'
miRNA:   3'- -CUG-UUGCCgGCGga-----CCGGUGG---UCCCa -5'
5606 3' -62.4 NC_001806.1 + 42000 0.69 0.405165
Target:  5'- gGGCGAgGGCUGCuccgugCUGGCCG-CGGGGUu -3'
miRNA:   3'- -CUGUUgCCGGCG------GACCGGUgGUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 49955 0.66 0.578462
Target:  5'- uGGCGGauGCCGUcgugcggCUGGCCAUCAacGGGUg -3'
miRNA:   3'- -CUGUUgcCGGCG-------GACCGGUGGU--CCCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.