miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5606 3' -62.4 NC_001806.1 + 145402 0.71 0.320485
Target:  5'- -cUAAgGGCCGgCUGGaagaCCGCCAGGGg -3'
miRNA:   3'- cuGUUgCCGGCgGACC----GGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 132183 0.71 0.320485
Target:  5'- uGGCGugGGCgCGCCUGGCgGCCAu--- -3'
miRNA:   3'- -CUGUugCCG-GCGGACCGgUGGUccca -5'
5606 3' -62.4 NC_001806.1 + 89899 0.71 0.334848
Target:  5'- gGACccCGcGuuGCC-GGCCGCCGGGGUu -3'
miRNA:   3'- -CUGuuGC-CggCGGaCCGGUGGUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 102680 0.71 0.342204
Target:  5'- uACAGcCGGCCGCac-GCCugCAGGGa -3'
miRNA:   3'- cUGUU-GCCGGCGgacCGGugGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 3034 0.71 0.342204
Target:  5'- uGCGcUGGCCGCCgccGCCAgCAGGGg -3'
miRNA:   3'- cUGUuGCCGGCGGac-CGGUgGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 23086 0.7 0.357263
Target:  5'- ---uGCGcGCCgugaGCCUGGUCGCCGGGGc -3'
miRNA:   3'- cuguUGC-CGG----CGGACCGGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 120297 0.7 0.364966
Target:  5'- uGCccUGGCCGuCCUGGCaCACCuGGGg -3'
miRNA:   3'- cUGuuGCCGGC-GGACCG-GUGGuCCCa -5'
5606 3' -62.4 NC_001806.1 + 89337 0.7 0.380711
Target:  5'- gGACAGCgGGCCGCC--GCCACCGGa-- -3'
miRNA:   3'- -CUGUUG-CCGGCGGacCGGUGGUCcca -5'
5606 3' -62.4 NC_001806.1 + 22866 0.7 0.388752
Target:  5'- cGACcuGGCGGCCGUCccggGGCUgGCCGGGGc -3'
miRNA:   3'- -CUG--UUGCCGGCGGa---CCGG-UGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 100642 0.7 0.388752
Target:  5'- cGGCcuGCcGCCGCCgcucGGCCACCAGGc- -3'
miRNA:   3'- -CUGu-UGcCGGCGGa---CCGGUGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 42000 0.69 0.405165
Target:  5'- gGGCGAgGGCUGCuccgugCUGGCCG-CGGGGUu -3'
miRNA:   3'- -CUGUUgCCGGCG------GACCGGUgGUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 147810 0.69 0.405165
Target:  5'- uGGCAugGG-CGCCgcggggGGCCugUGGGGa -3'
miRNA:   3'- -CUGUugCCgGCGGa-----CCGGugGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 144183 0.69 0.422007
Target:  5'- cACGGCGGCCGCCgcaGCCGCCGc--- -3'
miRNA:   3'- cUGUUGCCGGCGGac-CGGUGGUccca -5'
5606 3' -62.4 NC_001806.1 + 77272 0.69 0.430585
Target:  5'- cGCggUGGCCGgggaCCUGGCC-CCAuGGGc -3'
miRNA:   3'- cUGuuGCCGGC----GGACCGGuGGU-CCCa -5'
5606 3' -62.4 NC_001806.1 + 4057 0.69 0.439264
Target:  5'- aGCu-CGGgCGCCcacacGGCCGCCGGGGc -3'
miRNA:   3'- cUGuuGCCgGCGGa----CCGGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 76327 0.69 0.439264
Target:  5'- cGGCGGCGGCCGCCgagcuuguccgGGCa---GGGGUc -3'
miRNA:   3'- -CUGUUGCCGGCGGa----------CCGguggUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 12068 0.69 0.448042
Target:  5'- cGCAaaaGCGGCUGUUgGGCCAgauugagcuCCAGGGUg -3'
miRNA:   3'- cUGU---UGCCGGCGGaCCGGU---------GGUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 65327 0.69 0.448042
Target:  5'- gGACGuCGGCCGUCUGGgUACCGGu-- -3'
miRNA:   3'- -CUGUuGCCGGCGGACCgGUGGUCcca -5'
5606 3' -62.4 NC_001806.1 + 37765 0.69 0.448042
Target:  5'- cGGCGGCGGgCGCCUuucgcuccggGGCCgggGCgCGGGGg -3'
miRNA:   3'- -CUGUUGCCgGCGGA----------CCGG---UG-GUCCCa -5'
5606 3' -62.4 NC_001806.1 + 105142 0.68 0.456916
Target:  5'- cGGgGGCGGCCGUgccGCC-CCAGGGUg -3'
miRNA:   3'- -CUgUUGCCGGCGgacCGGuGGUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.