miRNA display CGI


Results 41 - 60 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5606 3' -62.4 NC_001806.1 + 57095 0.68 0.465885
Target:  5'- aACAAgGGCCGCUccaccGGCCGCCAGu-- -3'
miRNA:   3'- cUGUUgCCGGCGGa----CCGGUGGUCcca -5'
5606 3' -62.4 NC_001806.1 + 117765 0.68 0.474943
Target:  5'- uGGCGACGGCCGaguCCUGGCUGCUAu--- -3'
miRNA:   3'- -CUGUUGCCGGC---GGACCGGUGGUccca -5'
5606 3' -62.4 NC_001806.1 + 57601 0.68 0.474943
Target:  5'- --gGGCGGCCGCCaaGGCCccGCCccgucAGGGg -3'
miRNA:   3'- cugUUGCCGGCGGa-CCGG--UGG-----UCCCa -5'
5606 3' -62.4 NC_001806.1 + 135573 0.68 0.478591
Target:  5'- gGACu-CGGCCGCCaggucGGCCGcgcgcugcuggcgcuCCAGGGc -3'
miRNA:   3'- -CUGuuGCCGGCGGa----CCGGU---------------GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 119611 0.68 0.49054
Target:  5'- cGGCGGgGGCCGCUuugUGGCCccagcgccccacggGcCCGGGGg -3'
miRNA:   3'- -CUGUUgCCGGCGG---ACCGG--------------U-GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 77961 0.68 0.493317
Target:  5'- cGCGGCGGCC-CCggGGCCGCCGcucGGa -3'
miRNA:   3'- cUGUUGCCGGcGGa-CCGGUGGUc--CCa -5'
5606 3' -62.4 NC_001806.1 + 21481 0.68 0.493317
Target:  5'- cGACGACGcagccgacGCCGCC-GGCgACCGGGc- -3'
miRNA:   3'- -CUGUUGC--------CGGCGGaCCGgUGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 19662 0.68 0.493317
Target:  5'- cGCAACGGUCGCCgccGGUCGCCucgacgAGGa- -3'
miRNA:   3'- cUGUUGCCGGCGGa--CCGGUGG------UCCca -5'
5606 3' -62.4 NC_001806.1 + 106763 0.68 0.493317
Target:  5'- cGACAACGGCuccgcgcuggaCGCCUccGCCGCguGGGc -3'
miRNA:   3'- -CUGUUGCCG-----------GCGGAc-CGGUGguCCCa -5'
5606 3' -62.4 NC_001806.1 + 85998 0.68 0.502626
Target:  5'- aGGCGACGGCgucucccgggggCGCUUGGCCggggagggcaggGCCGcGGGg -3'
miRNA:   3'- -CUGUUGCCG------------GCGGACCGG------------UGGU-CCCa -5'
5606 3' -62.4 NC_001806.1 + 73341 0.68 0.502626
Target:  5'- aGCGccuuACGGUCGCCguauccGGCCucuCCGGGGc -3'
miRNA:   3'- cUGU----UGCCGGCGGa-----CCGGu--GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 99967 0.68 0.502626
Target:  5'- cGACcccgcGCGGCgCGCCUcGaGCCuccCCGGGGUa -3'
miRNA:   3'- -CUGu----UGCCG-GCGGA-C-CGGu--GGUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 103151 0.67 0.512011
Target:  5'- gGGCAGCGGCaGCCgcugugcgcugGGCCugUAGGa- -3'
miRNA:   3'- -CUGUUGCCGgCGGa----------CCGGugGUCCca -5'
5606 3' -62.4 NC_001806.1 + 33778 0.67 0.512011
Target:  5'- uGCGGCGGCCGCCguguucGGUCucgguagccgGCCGgcGGGUg -3'
miRNA:   3'- cUGUUGCCGGCGGa-----CCGG----------UGGU--CCCA- -5'
5606 3' -62.4 NC_001806.1 + 41360 0.67 0.521467
Target:  5'- ----cCGGCauCCaGGCCGCCAGGGg -3'
miRNA:   3'- cuguuGCCGgcGGaCCGGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 3799 0.67 0.521467
Target:  5'- cACGGCGGCCGCCgcgugCGCCAGGc- -3'
miRNA:   3'- cUGUUGCCGGCGGaccg-GUGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 26399 0.67 0.521467
Target:  5'- cGCGGCccccGCCGCCcccGGCCGCCcGGGc -3'
miRNA:   3'- cUGUUGc---CGGCGGa--CCGGUGGuCCCa -5'
5606 3' -62.4 NC_001806.1 + 3384 0.67 0.521467
Target:  5'- --gGACGGCCGCCaGGUCGCCGu--- -3'
miRNA:   3'- cugUUGCCGGCGGaCCGGUGGUccca -5'
5606 3' -62.4 NC_001806.1 + 9983 0.67 0.530991
Target:  5'- uGACGGaGGCCGCCUGccacGCCAgccCCGGGa- -3'
miRNA:   3'- -CUGUUgCCGGCGGAC----CGGU---GGUCCca -5'
5606 3' -62.4 NC_001806.1 + 71687 0.67 0.530991
Target:  5'- cAUAAacaGGCCGggucUCUGGCCAgCAGGGc -3'
miRNA:   3'- cUGUUg--CCGGC----GGACCGGUgGUCCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.