miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5606 3' -62.4 NC_001806.1 + 103022 0.75 0.197144
Target:  5'- cGGCGGCGGCCGCCgccgucuccaGcGCCuCCAGGGc -3'
miRNA:   3'- -CUGUUGCCGGCGGa---------C-CGGuGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 50255 0.75 0.183355
Target:  5'- ----cCGGCCGCaugacguacCUGGCCACCGGGGc -3'
miRNA:   3'- cuguuGCCGGCG---------GACCGGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 30738 0.76 0.146991
Target:  5'- cGCGGgGGCCGCCUcuuccGCCGCCGGGGc -3'
miRNA:   3'- cUGUUgCCGGCGGAc----CGGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 92898 0.77 0.139855
Target:  5'- aGGCuGCGGCCGCgUGGuCCGCgCAGGGc -3'
miRNA:   3'- -CUGuUGCCGGCGgACC-GGUG-GUCCCa -5'
5606 3' -62.4 NC_001806.1 + 58332 0.79 0.098202
Target:  5'- uGGCGuugGCGGCCGCCUGGCcCGCCuuGGUg -3'
miRNA:   3'- -CUGU---UGCCGGCGGACCG-GUGGucCCA- -5'
5606 3' -62.4 NC_001806.1 + 53862 0.72 0.290527
Target:  5'- cGACGGCGGCCagcuguuuggcaGCCgcgcggggaucagGGUCGCCGGGGc -3'
miRNA:   3'- -CUGUUGCCGG------------CGGa------------CCGGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 29972 0.72 0.299815
Target:  5'- cGCGGgGGgCGUCUGGCCccuCCGGGGg -3'
miRNA:   3'- cUGUUgCCgGCGGACCGGu--GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 22866 0.7 0.388752
Target:  5'- cGACcuGGCGGCCGUCccggGGCUgGCCGGGGc -3'
miRNA:   3'- -CUG--UUGCCGGCGGa---CCGG-UGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 89337 0.7 0.380711
Target:  5'- gGACAGCgGGCCGCC--GCCACCGGa-- -3'
miRNA:   3'- -CUGUUG-CCGGCGGacCGGUGGUCcca -5'
5606 3' -62.4 NC_001806.1 + 120297 0.7 0.364966
Target:  5'- uGCccUGGCCGuCCUGGCaCACCuGGGg -3'
miRNA:   3'- cUGuuGCCGGC-GGACCG-GUGGuCCCa -5'
5606 3' -62.4 NC_001806.1 + 23086 0.7 0.357263
Target:  5'- ---uGCGcGCCgugaGCCUGGUCGCCGGGGc -3'
miRNA:   3'- cuguUGC-CGG----CGGACCGGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 3034 0.71 0.342204
Target:  5'- uGCGcUGGCCGCCgccGCCAgCAGGGg -3'
miRNA:   3'- cUGUuGCCGGCGGac-CGGUgGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 102680 0.71 0.342204
Target:  5'- uACAGcCGGCCGCac-GCCugCAGGGa -3'
miRNA:   3'- cUGUU-GCCGGCGgacCGGugGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 89899 0.71 0.334848
Target:  5'- gGACccCGcGuuGCC-GGCCGCCGGGGUu -3'
miRNA:   3'- -CUGuuGC-CggCGGaCCGGUGGUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 145402 0.71 0.320485
Target:  5'- -cUAAgGGCCGgCUGGaagaCCGCCAGGGg -3'
miRNA:   3'- cuGUUgCCGGCgGACC----GGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 132183 0.71 0.320485
Target:  5'- uGGCGugGGCgCGCCUGGCgGCCAu--- -3'
miRNA:   3'- -CUGUugCCG-GCGGACCGgUGGUccca -5'
5606 3' -62.4 NC_001806.1 + 9173 0.71 0.313478
Target:  5'- aGACAACGGCCGUgUaGCC-CgGGGGUc -3'
miRNA:   3'- -CUGUUGCCGGCGgAcCGGuGgUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 5093 0.71 0.313478
Target:  5'- gGGCGGCGGcCCGUCgguggGGCCcggggaGCCGGGGc -3'
miRNA:   3'- -CUGUUGCC-GGCGGa----CCGG------UGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 34399 0.71 0.306588
Target:  5'- gGGCGGCGGUgGCCgGGCCggGCCGGGc- -3'
miRNA:   3'- -CUGUUGCCGgCGGaCCGG--UGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 24790 0.71 0.305906
Target:  5'- cGACGACGGCCcgggggcccugccGCCgGcGCCGCCcGGGa -3'
miRNA:   3'- -CUGUUGCCGG-------------CGGaC-CGGUGGuCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.