Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5606 | 3' | -62.4 | NC_001806.1 | + | 50255 | 0.75 | 0.183355 |
Target: 5'- ----cCGGCCGCaugacguacCUGGCCACCGGGGc -3' miRNA: 3'- cuguuGCCGGCG---------GACCGGUGGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 50682 | 0.72 | 0.286616 |
Target: 5'- cGCGGCGGCCacgcgcGCCauucUGGCCGCCGGGc- -3' miRNA: 3'- cUGUUGCCGG------CGG----ACCGGUGGUCCca -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 53862 | 0.72 | 0.290527 |
Target: 5'- cGACGGCGGCCagcuguuuggcaGCCgcgcggggaucagGGUCGCCGGGGc -3' miRNA: 3'- -CUGUUGCCGG------------CGGa------------CCGGUGGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 54657 | 0.66 | 0.569658 |
Target: 5'- -gUAACGGCCGaCUUaGCCGCCggugaGGGGUc -3' miRNA: 3'- cuGUUGCCGGC-GGAcCGGUGG-----UCCCA- -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 55506 | 0.66 | 0.579442 |
Target: 5'- cGCGGCGGUCGCaccacacgGGCC-CgGGGGg -3' miRNA: 3'- cUGUUGCCGGCGga------CCGGuGgUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 57095 | 0.68 | 0.465885 |
Target: 5'- aACAAgGGCCGCUccaccGGCCGCCAGu-- -3' miRNA: 3'- cUGUUgCCGGCGGa----CCGGUGGUCcca -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 57601 | 0.68 | 0.474943 |
Target: 5'- --gGGCGGCCGCCaaGGCCccGCCccgucAGGGg -3' miRNA: 3'- cugUUGCCGGCGGa-CCGG--UGG-----UCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 58332 | 0.79 | 0.098202 |
Target: 5'- uGGCGuugGCGGCCGCCUGGCcCGCCuuGGUg -3' miRNA: 3'- -CUGU---UGCCGGCGGACCG-GUGGucCCA- -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 61431 | 0.73 | 0.249774 |
Target: 5'- -uCGAUGGCCGCCaGcGCCGCCGGGc- -3' miRNA: 3'- cuGUUGCCGGCGGaC-CGGUGGUCCca -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 62303 | 0.66 | 0.599109 |
Target: 5'- cGACAgugGCGGCgGgCCUGGCgCGgaGGGGg -3' miRNA: 3'- -CUGU---UGCCGgC-GGACCG-GUggUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 65327 | 0.69 | 0.448042 |
Target: 5'- gGACGuCGGCCGUCUGGgUACCGGu-- -3' miRNA: 3'- -CUGUuGCCGGCGGACCgGUGGUCcca -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 65675 | 0.67 | 0.559916 |
Target: 5'- cGCuGgGGCCGCC-GGCCuccugucccccaACCGGGGc -3' miRNA: 3'- cUGuUgCCGGCGGaCCGG------------UGGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 67160 | 0.66 | 0.628764 |
Target: 5'- --gGGCGGUCGCCuccaucagcUGGCC-CCAGGc- -3' miRNA: 3'- cugUUGCCGGCGG---------ACCGGuGGUCCca -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 71687 | 0.67 | 0.530991 |
Target: 5'- cAUAAacaGGCCGggucUCUGGCCAgCAGGGc -3' miRNA: 3'- cUGUUg--CCGGC----GGACCGGUgGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 73341 | 0.68 | 0.502626 |
Target: 5'- aGCGccuuACGGUCGCCguauccGGCCucuCCGGGGc -3' miRNA: 3'- cUGU----UGCCGGCGGa-----CCGGu--GGUCCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 74599 | 0.66 | 0.569658 |
Target: 5'- cGACGACGGCgGgCU-GUCGCCAGaGGc -3' miRNA: 3'- -CUGUUGCCGgCgGAcCGGUGGUC-CCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 76327 | 0.69 | 0.439264 |
Target: 5'- cGGCGGCGGCCGCCgagcuuguccgGGCa---GGGGUc -3' miRNA: 3'- -CUGUUGCCGGCGGa----------CCGguggUCCCA- -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 77272 | 0.69 | 0.430585 |
Target: 5'- cGCggUGGCCGgggaCCUGGCC-CCAuGGGc -3' miRNA: 3'- cUGuuGCCGGC----GGACCGGuGGU-CCCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 77961 | 0.68 | 0.493317 |
Target: 5'- cGCGGCGGCC-CCggGGCCGCCGcucGGa -3' miRNA: 3'- cUGUUGCCGGcGGa-CCGGUGGUc--CCa -5' |
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5606 | 3' | -62.4 | NC_001806.1 | + | 79749 | 0.67 | 0.547321 |
Target: 5'- --uGGCGGCCGCCUgcccuccccgacacGGUCGCCccGGUu -3' miRNA: 3'- cugUUGCCGGCGGA--------------CCGGUGGucCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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