miRNA display CGI


Results 41 - 60 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5606 3' -62.4 NC_001806.1 + 67160 0.66 0.628764
Target:  5'- --gGGCGGUCGCCuccaucagcUGGCC-CCAGGc- -3'
miRNA:   3'- cugUUGCCGGCGG---------ACCGGuGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 65675 0.67 0.559916
Target:  5'- cGCuGgGGCCGCC-GGCCuccugucccccaACCGGGGc -3'
miRNA:   3'- cUGuUgCCGGCGGaCCGG------------UGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 65327 0.69 0.448042
Target:  5'- gGACGuCGGCCGUCUGGgUACCGGu-- -3'
miRNA:   3'- -CUGUuGCCGGCGGACCgGUGGUCcca -5'
5606 3' -62.4 NC_001806.1 + 62303 0.66 0.599109
Target:  5'- cGACAgugGCGGCgGgCCUGGCgCGgaGGGGg -3'
miRNA:   3'- -CUGU---UGCCGgC-GGACCG-GUggUCCCa -5'
5606 3' -62.4 NC_001806.1 + 61431 0.73 0.249774
Target:  5'- -uCGAUGGCCGCCaGcGCCGCCGGGc- -3'
miRNA:   3'- cuGUUGCCGGCGGaC-CGGUGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 58332 0.79 0.098202
Target:  5'- uGGCGuugGCGGCCGCCUGGCcCGCCuuGGUg -3'
miRNA:   3'- -CUGU---UGCCGGCGGACCG-GUGGucCCA- -5'
5606 3' -62.4 NC_001806.1 + 57601 0.68 0.474943
Target:  5'- --gGGCGGCCGCCaaGGCCccGCCccgucAGGGg -3'
miRNA:   3'- cugUUGCCGGCGGa-CCGG--UGG-----UCCCa -5'
5606 3' -62.4 NC_001806.1 + 57095 0.68 0.465885
Target:  5'- aACAAgGGCCGCUccaccGGCCGCCAGu-- -3'
miRNA:   3'- cUGUUgCCGGCGGa----CCGGUGGUCcca -5'
5606 3' -62.4 NC_001806.1 + 55506 0.66 0.579442
Target:  5'- cGCGGCGGUCGCaccacacgGGCC-CgGGGGg -3'
miRNA:   3'- cUGUUGCCGGCGga------CCGGuGgUCCCa -5'
5606 3' -62.4 NC_001806.1 + 54657 0.66 0.569658
Target:  5'- -gUAACGGCCGaCUUaGCCGCCggugaGGGGUc -3'
miRNA:   3'- cuGUUGCCGGC-GGAcCGGUGG-----UCCCA- -5'
5606 3' -62.4 NC_001806.1 + 53862 0.72 0.290527
Target:  5'- cGACGGCGGCCagcuguuuggcaGCCgcgcggggaucagGGUCGCCGGGGc -3'
miRNA:   3'- -CUGUUGCCGG------------CGGa------------CCGGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 50682 0.72 0.286616
Target:  5'- cGCGGCGGCCacgcgcGCCauucUGGCCGCCGGGc- -3'
miRNA:   3'- cUGUUGCCGG------CGG----ACCGGUGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 50255 0.75 0.183355
Target:  5'- ----cCGGCCGCaugacguacCUGGCCACCGGGGc -3'
miRNA:   3'- cuguuGCCGGCG---------GACCGGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 49955 0.66 0.578462
Target:  5'- uGGCGGauGCCGUcgugcggCUGGCCAUCAacGGGUg -3'
miRNA:   3'- -CUGUUgcCGGCG-------GACCGGUGGU--CCCA- -5'
5606 3' -62.4 NC_001806.1 + 42000 0.69 0.405165
Target:  5'- gGGCGAgGGCUGCuccgugCUGGCCG-CGGGGUu -3'
miRNA:   3'- -CUGUUgCCGGCG------GACCGGUgGUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 41723 0.66 0.589261
Target:  5'- gGACuGGCGGgCGCaaacgcgGGCCACCcgcGGGGg -3'
miRNA:   3'- -CUG-UUGCCgGCGga-----CCGGUGG---UCCCa -5'
5606 3' -62.4 NC_001806.1 + 41360 0.67 0.521467
Target:  5'- ----cCGGCauCCaGGCCGCCAGGGg -3'
miRNA:   3'- cuguuGCCGgcGGaCCGGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 37765 0.69 0.448042
Target:  5'- cGGCGGCGGgCGCCUuucgcuccggGGCCgggGCgCGGGGg -3'
miRNA:   3'- -CUGUUGCCgGCGGA----------CCGG---UG-GUCCCa -5'
5606 3' -62.4 NC_001806.1 + 34399 0.71 0.306588
Target:  5'- gGGCGGCGGUgGCCgGGCCggGCCGGGc- -3'
miRNA:   3'- -CUGUUGCCGgCGGaCCGG--UGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 33778 0.67 0.512011
Target:  5'- uGCGGCGGCCGCCguguucGGUCucgguagccgGCCGgcGGGUg -3'
miRNA:   3'- cUGUUGCCGGCGGa-----CCGG----------UGGU--CCCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.