miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5606 3' -62.4 NC_001806.1 + 103151 0.67 0.512011
Target:  5'- gGGCAGCGGCaGCCgcugugcgcugGGCCugUAGGa- -3'
miRNA:   3'- -CUGUUGCCGgCGGa----------CCGGugGUCCca -5'
5606 3' -62.4 NC_001806.1 + 103022 0.75 0.197144
Target:  5'- cGGCGGCGGCCGCCgccgucuccaGcGCCuCCAGGGc -3'
miRNA:   3'- -CUGUUGCCGGCGGa---------C-CGGuGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 102680 0.71 0.342204
Target:  5'- uACAGcCGGCCGCac-GCCugCAGGGa -3'
miRNA:   3'- cUGUU-GCCGGCGgacCGGugGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 100642 0.7 0.388752
Target:  5'- cGGCcuGCcGCCGCCgcucGGCCACCAGGc- -3'
miRNA:   3'- -CUGu-UGcCGGCGGa---CCGGUGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 99967 0.68 0.502626
Target:  5'- cGACcccgcGCGGCgCGCCUcGaGCCuccCCGGGGUa -3'
miRNA:   3'- -CUGu----UGCCG-GCGGA-C-CGGu--GGUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 98009 0.66 0.618867
Target:  5'- -cCAACGccaUCGCCUcGGCCACCGuGGGc -3'
miRNA:   3'- cuGUUGCc--GGCGGA-CCGGUGGU-CCCa -5'
5606 3' -62.4 NC_001806.1 + 95502 0.66 0.573567
Target:  5'- cGACGGCGGCuguacgcggacCGCCugacgaagcggucguUGGCCAgCCuGGGg -3'
miRNA:   3'- -CUGUUGCCG-----------GCGG---------------ACCGGU-GGuCCCa -5'
5606 3' -62.4 NC_001806.1 + 93568 0.66 0.599109
Target:  5'- cGACAACGcgacGCCGUUcGGCgGcCCGGGGg -3'
miRNA:   3'- -CUGUUGC----CGGCGGaCCGgU-GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 92898 0.77 0.139855
Target:  5'- aGGCuGCGGCCGCgUGGuCCGCgCAGGGc -3'
miRNA:   3'- -CUGuUGCCGGCGgACC-GGUG-GUCCCa -5'
5606 3' -62.4 NC_001806.1 + 89899 0.71 0.334848
Target:  5'- gGACccCGcGuuGCC-GGCCGCCGGGGUu -3'
miRNA:   3'- -CUGuuGC-CggCGGaCCGGUGGUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 89337 0.7 0.380711
Target:  5'- gGACAGCgGGCCGCC--GCCACCGGa-- -3'
miRNA:   3'- -CUGUUG-CCGGCGGacCGGUGGUCcca -5'
5606 3' -62.4 NC_001806.1 + 88066 0.72 0.280191
Target:  5'- cGugGGCaGGCC-CCUGGCCGCCAGcucguucaGGUg -3'
miRNA:   3'- -CugUUG-CCGGcGGACCGGUGGUC--------CCA- -5'
5606 3' -62.4 NC_001806.1 + 85998 0.68 0.502626
Target:  5'- aGGCGACGGCgucucccgggggCGCUUGGCCggggagggcaggGCCGcGGGg -3'
miRNA:   3'- -CUGUUGCCG------------GCGGACCGG------------UGGU-CCCa -5'
5606 3' -62.4 NC_001806.1 + 79749 0.67 0.547321
Target:  5'- --uGGCGGCCGCCUgcccuccccgacacGGUCGCCccGGUu -3'
miRNA:   3'- cugUUGCCGGCGGA--------------CCGGUGGucCCA- -5'
5606 3' -62.4 NC_001806.1 + 77961 0.68 0.493317
Target:  5'- cGCGGCGGCC-CCggGGCCGCCGcucGGa -3'
miRNA:   3'- cUGUUGCCGGcGGa-CCGGUGGUc--CCa -5'
5606 3' -62.4 NC_001806.1 + 77272 0.69 0.430585
Target:  5'- cGCggUGGCCGgggaCCUGGCC-CCAuGGGc -3'
miRNA:   3'- cUGuuGCCGGC----GGACCGGuGGU-CCCa -5'
5606 3' -62.4 NC_001806.1 + 76327 0.69 0.439264
Target:  5'- cGGCGGCGGCCGCCgagcuuguccgGGCa---GGGGUc -3'
miRNA:   3'- -CUGUUGCCGGCGGa----------CCGguggUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 74599 0.66 0.569658
Target:  5'- cGACGACGGCgGgCU-GUCGCCAGaGGc -3'
miRNA:   3'- -CUGUUGCCGgCgGAcCGGUGGUC-CCa -5'
5606 3' -62.4 NC_001806.1 + 73341 0.68 0.502626
Target:  5'- aGCGccuuACGGUCGCCguauccGGCCucuCCGGGGc -3'
miRNA:   3'- cUGU----UGCCGGCGGa-----CCGGu--GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 71687 0.67 0.530991
Target:  5'- cAUAAacaGGCCGggucUCUGGCCAgCAGGGc -3'
miRNA:   3'- cUGUUg--CCGGC----GGACCGGUgGUCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.