miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5606 3' -62.4 NC_001806.1 + 151532 0.67 0.540577
Target:  5'- gGACGGCGcCCguggGCCcgGGCgGCCGGGGg -3'
miRNA:   3'- -CUGUUGCcGG----CGGa-CCGgUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 147810 0.69 0.405165
Target:  5'- uGGCAugGG-CGCCgcggggGGCCugUGGGGa -3'
miRNA:   3'- -CUGUugCCgGCGGa-----CCGGugGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 147662 0.66 0.618867
Target:  5'- gGGCgGGCGGCCGgCUccGCC-CCGGGGg -3'
miRNA:   3'- -CUG-UUGCCGGCgGAc-CGGuGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 146870 0.66 0.607992
Target:  5'- cGCAGcCGGgucgccauguuucCCGUCUGGuCCACCAGGa- -3'
miRNA:   3'- cUGUU-GCC-------------GGCGGACC-GGUGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 145402 0.71 0.320485
Target:  5'- -cUAAgGGCCGgCUGGaagaCCGCCAGGGg -3'
miRNA:   3'- cuGUUgCCGGCgGACC----GGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 144183 0.69 0.422007
Target:  5'- cACGGCGGCCGCCgcaGCCGCCGc--- -3'
miRNA:   3'- cUGUUGCCGGCGGac-CGGUGGUccca -5'
5606 3' -62.4 NC_001806.1 + 135573 0.68 0.478591
Target:  5'- gGACu-CGGCCGCCaggucGGCCGcgcgcugcuggcgcuCCAGGGc -3'
miRNA:   3'- -CUGuuGCCGGCGGa----CCGGU---------------GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 133285 0.66 0.618867
Target:  5'- cGGCuGCGGCacccacugUGCCUGGCCcuCgAGGGc -3'
miRNA:   3'- -CUGuUGCCG--------GCGGACCGGu-GgUCCCa -5'
5606 3' -62.4 NC_001806.1 + 132183 0.71 0.320485
Target:  5'- uGGCGugGGCgCGCCUGGCgGCCAu--- -3'
miRNA:   3'- -CUGUugCCG-GCGGACCGgUGGUccca -5'
5606 3' -62.4 NC_001806.1 + 130813 0.66 0.622825
Target:  5'- aGCAccAUGGCCGCgcgccugcauugggaCUcGGCgGCCGGGGg -3'
miRNA:   3'- cUGU--UGCCGGCG---------------GA-CCGgUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 126286 0.66 0.628764
Target:  5'- gGACAuucACGGCUaCCUGGCC-CCAGu-- -3'
miRNA:   3'- -CUGU---UGCCGGcGGACCGGuGGUCcca -5'
5606 3' -62.4 NC_001806.1 + 121536 0.66 0.625794
Target:  5'- --gGAUGGCU-CCUGGCCAggaucaccaaccacCCGGGGg -3'
miRNA:   3'- cugUUGCCGGcGGACCGGU--------------GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 120864 0.72 0.27388
Target:  5'- cGGCGGCcccuggcGCCGCCUGGuCCcCCGGGGa -3'
miRNA:   3'- -CUGUUGc------CGGCGGACC-GGuGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 120297 0.7 0.364966
Target:  5'- uGCccUGGCCGuCCUGGCaCACCuGGGg -3'
miRNA:   3'- cUGuuGCCGGC-GGACCG-GUGGuCCCa -5'
5606 3' -62.4 NC_001806.1 + 119611 0.68 0.49054
Target:  5'- cGGCGGgGGCCGCUuugUGGCCccagcgccccacggGcCCGGGGg -3'
miRNA:   3'- -CUGUUgCCGGCGG---ACCGG--------------U-GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 117765 0.68 0.474943
Target:  5'- uGGCGACGGCCGaguCCUGGCUGCUAu--- -3'
miRNA:   3'- -CUGUUGCCGGC---GGACCGGUGGUccca -5'
5606 3' -62.4 NC_001806.1 + 115234 0.66 0.60898
Target:  5'- cGGgGACGcGCCGCCgggGGCguuUACgCGGGGg -3'
miRNA:   3'- -CUgUUGC-CGGCGGa--CCG---GUG-GUCCCa -5'
5606 3' -62.4 NC_001806.1 + 112236 1.07 0.001009
Target:  5'- gGACAACGGCCGCCUGGCCACCAGGGUg -3'
miRNA:   3'- -CUGUUGCCGGCGGACCGGUGGUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 106763 0.68 0.493317
Target:  5'- cGACAACGGCuccgcgcuggaCGCCUccGCCGCguGGGc -3'
miRNA:   3'- -CUGUUGCCG-----------GCGGAc-CGGUGguCCCa -5'
5606 3' -62.4 NC_001806.1 + 105142 0.68 0.456916
Target:  5'- cGGgGGCGGCCGUgccGCC-CCAGGGUg -3'
miRNA:   3'- -CUgUUGCCGGCGgacCGGuGGUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.