miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5606 3' -62.4 NC_001806.1 + 85998 0.68 0.502626
Target:  5'- aGGCGACGGCgucucccgggggCGCUUGGCCggggagggcaggGCCGcGGGg -3'
miRNA:   3'- -CUGUUGCCG------------GCGGACCGG------------UGGU-CCCa -5'
5606 3' -62.4 NC_001806.1 + 88066 0.72 0.280191
Target:  5'- cGugGGCaGGCC-CCUGGCCGCCAGcucguucaGGUg -3'
miRNA:   3'- -CugUUG-CCGGcGGACCGGUGGUC--------CCA- -5'
5606 3' -62.4 NC_001806.1 + 89337 0.7 0.380711
Target:  5'- gGACAGCgGGCCGCC--GCCACCGGa-- -3'
miRNA:   3'- -CUGUUG-CCGGCGGacCGGUGGUCcca -5'
5606 3' -62.4 NC_001806.1 + 89899 0.71 0.334848
Target:  5'- gGACccCGcGuuGCC-GGCCGCCGGGGUu -3'
miRNA:   3'- -CUGuuGC-CggCGGaCCGGUGGUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 92898 0.77 0.139855
Target:  5'- aGGCuGCGGCCGCgUGGuCCGCgCAGGGc -3'
miRNA:   3'- -CUGuUGCCGGCGgACC-GGUG-GUCCCa -5'
5606 3' -62.4 NC_001806.1 + 93568 0.66 0.599109
Target:  5'- cGACAACGcgacGCCGUUcGGCgGcCCGGGGg -3'
miRNA:   3'- -CUGUUGC----CGGCGGaCCGgU-GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 95502 0.66 0.573567
Target:  5'- cGACGGCGGCuguacgcggacCGCCugacgaagcggucguUGGCCAgCCuGGGg -3'
miRNA:   3'- -CUGUUGCCG-----------GCGG---------------ACCGGU-GGuCCCa -5'
5606 3' -62.4 NC_001806.1 + 98009 0.66 0.618867
Target:  5'- -cCAACGccaUCGCCUcGGCCACCGuGGGc -3'
miRNA:   3'- cuGUUGCc--GGCGGA-CCGGUGGU-CCCa -5'
5606 3' -62.4 NC_001806.1 + 99967 0.68 0.502626
Target:  5'- cGACcccgcGCGGCgCGCCUcGaGCCuccCCGGGGUa -3'
miRNA:   3'- -CUGu----UGCCG-GCGGA-C-CGGu--GGUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 100642 0.7 0.388752
Target:  5'- cGGCcuGCcGCCGCCgcucGGCCACCAGGc- -3'
miRNA:   3'- -CUGu-UGcCGGCGGa---CCGGUGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 102680 0.71 0.342204
Target:  5'- uACAGcCGGCCGCac-GCCugCAGGGa -3'
miRNA:   3'- cUGUU-GCCGGCGgacCGGugGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 103022 0.75 0.197144
Target:  5'- cGGCGGCGGCCGCCgccgucuccaGcGCCuCCAGGGc -3'
miRNA:   3'- -CUGUUGCCGGCGGa---------C-CGGuGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 103151 0.67 0.512011
Target:  5'- gGGCAGCGGCaGCCgcugugcgcugGGCCugUAGGa- -3'
miRNA:   3'- -CUGUUGCCGgCGGa----------CCGGugGUCCca -5'
5606 3' -62.4 NC_001806.1 + 105142 0.68 0.456916
Target:  5'- cGGgGGCGGCCGUgccGCC-CCAGGGUg -3'
miRNA:   3'- -CUgUUGCCGGCGgacCGGuGGUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 106763 0.68 0.493317
Target:  5'- cGACAACGGCuccgcgcuggaCGCCUccGCCGCguGGGc -3'
miRNA:   3'- -CUGUUGCCG-----------GCGGAc-CGGUGguCCCa -5'
5606 3' -62.4 NC_001806.1 + 112236 1.07 0.001009
Target:  5'- gGACAACGGCCGCCUGGCCACCAGGGUg -3'
miRNA:   3'- -CUGUUGCCGGCGGACCGGUGGUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 115234 0.66 0.60898
Target:  5'- cGGgGACGcGCCGCCgggGGCguuUACgCGGGGg -3'
miRNA:   3'- -CUgUUGC-CGGCGGa--CCG---GUG-GUCCCa -5'
5606 3' -62.4 NC_001806.1 + 117765 0.68 0.474943
Target:  5'- uGGCGACGGCCGaguCCUGGCUGCUAu--- -3'
miRNA:   3'- -CUGUUGCCGGC---GGACCGGUGGUccca -5'
5606 3' -62.4 NC_001806.1 + 119611 0.68 0.49054
Target:  5'- cGGCGGgGGCCGCUuugUGGCCccagcgccccacggGcCCGGGGg -3'
miRNA:   3'- -CUGUUgCCGGCGG---ACCGG--------------U-GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 120297 0.7 0.364966
Target:  5'- uGCccUGGCCGuCCUGGCaCACCuGGGg -3'
miRNA:   3'- cUGuuGCCGGC-GGACCG-GUGGuCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.