miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5606 3' -62.4 NC_001806.1 + 3639 0.67 0.537695
Target:  5'- cGGCGACGGCgGCgacccccucgucauCUGcGCCggcGCCGGGGc -3'
miRNA:   3'- -CUGUUGCCGgCG--------------GAC-CGG---UGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 151532 0.67 0.540577
Target:  5'- gGACGGCGcCCguggGCCcgGGCgGCCGGGGg -3'
miRNA:   3'- -CUGUUGCcGG----CGGa-CCGgUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 79749 0.67 0.547321
Target:  5'- --uGGCGGCCGCCUgcccuccccgacacGGUCGCCccGGUu -3'
miRNA:   3'- cugUUGCCGGCGGA--------------CCGGUGGucCCA- -5'
5606 3' -62.4 NC_001806.1 + 4351 0.67 0.55022
Target:  5'- cGGCGcucgauGCGGcCCGCggaGGCCGCgGGGGUc -3'
miRNA:   3'- -CUGU------UGCC-GGCGga-CCGGUGgUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 32983 0.67 0.55022
Target:  5'- cGCcGgGGCCccggGCCgGGCCGCCAcGGGg -3'
miRNA:   3'- cUGuUgCCGG----CGGaCCGGUGGU-CCCa -5'
5606 3' -62.4 NC_001806.1 + 3834 0.67 0.559916
Target:  5'- aGCGGcCGGCCGCCaUGGCguaGCCcagguGGGg -3'
miRNA:   3'- cUGUU-GCCGGCGG-ACCGg--UGGu----CCCa -5'
5606 3' -62.4 NC_001806.1 + 65675 0.67 0.559916
Target:  5'- cGCuGgGGCCGCC-GGCCuccugucccccaACCGGGGc -3'
miRNA:   3'- cUGuUgCCGGCGGaCCGG------------UGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 54657 0.66 0.569658
Target:  5'- -gUAACGGCCGaCUUaGCCGCCggugaGGGGUc -3'
miRNA:   3'- cuGUUGCCGGC-GGAcCGGUGG-----UCCCA- -5'
5606 3' -62.4 NC_001806.1 + 74599 0.66 0.569658
Target:  5'- cGACGACGGCgGgCU-GUCGCCAGaGGc -3'
miRNA:   3'- -CUGUUGCCGgCgGAcCGGUGGUC-CCa -5'
5606 3' -62.4 NC_001806.1 + 22183 0.66 0.569658
Target:  5'- -cCGGCGGCCGUgUGGgCGCCcgagcuGGGc -3'
miRNA:   3'- cuGUUGCCGGCGgACCgGUGGu-----CCCa -5'
5606 3' -62.4 NC_001806.1 + 95502 0.66 0.573567
Target:  5'- cGACGGCGGCuguacgcggacCGCCugacgaagcggucguUGGCCAgCCuGGGg -3'
miRNA:   3'- -CUGUUGCCG-----------GCGG---------------ACCGGU-GGuCCCa -5'
5606 3' -62.4 NC_001806.1 + 22790 0.66 0.573567
Target:  5'- aGGC--CGGCCgcguggccgucgaguGCCUGGCCGCCugccgcGGGa -3'
miRNA:   3'- -CUGuuGCCGG---------------CGGACCGGUGGu-----CCCa -5'
5606 3' -62.4 NC_001806.1 + 49955 0.66 0.578462
Target:  5'- uGGCGGauGCCGUcgugcggCUGGCCAUCAacGGGUg -3'
miRNA:   3'- -CUGUUgcCGGCG-------GACCGGUGGU--CCCA- -5'
5606 3' -62.4 NC_001806.1 + 55506 0.66 0.579442
Target:  5'- cGCGGCGGUCGCaccacacgGGCC-CgGGGGg -3'
miRNA:   3'- cUGUUGCCGGCGga------CCGGuGgUCCCa -5'
5606 3' -62.4 NC_001806.1 + 41723 0.66 0.589261
Target:  5'- gGACuGGCGGgCGCaaacgcgGGCCACCcgcGGGGg -3'
miRNA:   3'- -CUG-UUGCCgGCGga-----CCGGUGG---UCCCa -5'
5606 3' -62.4 NC_001806.1 + 33338 0.66 0.589261
Target:  5'- cGACGccccuUGGCCGCCccGGCUGCaGGGGg -3'
miRNA:   3'- -CUGUu----GCCGGCGGa-CCGGUGgUCCCa -5'
5606 3' -62.4 NC_001806.1 + 93568 0.66 0.599109
Target:  5'- cGACAACGcgacGCCGUUcGGCgGcCCGGGGg -3'
miRNA:   3'- -CUGUUGC----CGGCGGaCCGgU-GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 62303 0.66 0.599109
Target:  5'- cGACAgugGCGGCgGgCCUGGCgCGgaGGGGg -3'
miRNA:   3'- -CUGU---UGCCGgC-GGACCG-GUggUCCCa -5'
5606 3' -62.4 NC_001806.1 + 21925 0.66 0.599109
Target:  5'- cGCGGCGGUgGCC-GGCCgcgacGCCAcGGGc -3'
miRNA:   3'- cUGUUGCCGgCGGaCCGG-----UGGU-CCCa -5'
5606 3' -62.4 NC_001806.1 + 146870 0.66 0.607992
Target:  5'- cGCAGcCGGgucgccauguuucCCGUCUGGuCCACCAGGa- -3'
miRNA:   3'- cUGUU-GCC-------------GGCGGACC-GGUGGUCCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.