miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5606 3' -62.4 NC_001806.1 + 103151 0.67 0.512011
Target:  5'- gGGCAGCGGCaGCCgcugugcgcugGGCCugUAGGa- -3'
miRNA:   3'- -CUGUUGCCGgCGGa----------CCGGugGUCCca -5'
5606 3' -62.4 NC_001806.1 + 99967 0.68 0.502626
Target:  5'- cGACcccgcGCGGCgCGCCUcGaGCCuccCCGGGGUa -3'
miRNA:   3'- -CUGu----UGCCG-GCGGA-C-CGGu--GGUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 73341 0.68 0.502626
Target:  5'- aGCGccuuACGGUCGCCguauccGGCCucuCCGGGGc -3'
miRNA:   3'- cUGU----UGCCGGCGGa-----CCGGu--GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 85998 0.68 0.502626
Target:  5'- aGGCGACGGCgucucccgggggCGCUUGGCCggggagggcaggGCCGcGGGg -3'
miRNA:   3'- -CUGUUGCCG------------GCGGACCGG------------UGGU-CCCa -5'
5606 3' -62.4 NC_001806.1 + 77961 0.68 0.493317
Target:  5'- cGCGGCGGCC-CCggGGCCGCCGcucGGa -3'
miRNA:   3'- cUGUUGCCGGcGGa-CCGGUGGUc--CCa -5'
5606 3' -62.4 NC_001806.1 + 21481 0.68 0.493317
Target:  5'- cGACGACGcagccgacGCCGCC-GGCgACCGGGc- -3'
miRNA:   3'- -CUGUUGC--------CGGCGGaCCGgUGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 106763 0.68 0.493317
Target:  5'- cGACAACGGCuccgcgcuggaCGCCUccGCCGCguGGGc -3'
miRNA:   3'- -CUGUUGCCG-----------GCGGAc-CGGUGguCCCa -5'
5606 3' -62.4 NC_001806.1 + 19662 0.68 0.493317
Target:  5'- cGCAACGGUCGCCgccGGUCGCCucgacgAGGa- -3'
miRNA:   3'- cUGUUGCCGGCGGa--CCGGUGG------UCCca -5'
5606 3' -62.4 NC_001806.1 + 119611 0.68 0.49054
Target:  5'- cGGCGGgGGCCGCUuugUGGCCccagcgccccacggGcCCGGGGg -3'
miRNA:   3'- -CUGUUgCCGGCGG---ACCGG--------------U-GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 135573 0.68 0.478591
Target:  5'- gGACu-CGGCCGCCaggucGGCCGcgcgcugcuggcgcuCCAGGGc -3'
miRNA:   3'- -CUGuuGCCGGCGGa----CCGGU---------------GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 57601 0.68 0.474943
Target:  5'- --gGGCGGCCGCCaaGGCCccGCCccgucAGGGg -3'
miRNA:   3'- cugUUGCCGGCGGa-CCGG--UGG-----UCCCa -5'
5606 3' -62.4 NC_001806.1 + 117765 0.68 0.474943
Target:  5'- uGGCGACGGCCGaguCCUGGCUGCUAu--- -3'
miRNA:   3'- -CUGUUGCCGGC---GGACCGGUGGUccca -5'
5606 3' -62.4 NC_001806.1 + 57095 0.68 0.465885
Target:  5'- aACAAgGGCCGCUccaccGGCCGCCAGu-- -3'
miRNA:   3'- cUGUUgCCGGCGGa----CCGGUGGUCcca -5'
5606 3' -62.4 NC_001806.1 + 105142 0.68 0.456916
Target:  5'- cGGgGGCGGCCGUgccGCC-CCAGGGUg -3'
miRNA:   3'- -CUgUUGCCGGCGgacCGGuGGUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 12068 0.69 0.448042
Target:  5'- cGCAaaaGCGGCUGUUgGGCCAgauugagcuCCAGGGUg -3'
miRNA:   3'- cUGU---UGCCGGCGGaCCGGU---------GGUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 37765 0.69 0.448042
Target:  5'- cGGCGGCGGgCGCCUuucgcuccggGGCCgggGCgCGGGGg -3'
miRNA:   3'- -CUGUUGCCgGCGGA----------CCGG---UG-GUCCCa -5'
5606 3' -62.4 NC_001806.1 + 65327 0.69 0.448042
Target:  5'- gGACGuCGGCCGUCUGGgUACCGGu-- -3'
miRNA:   3'- -CUGUuGCCGGCGGACCgGUGGUCcca -5'
5606 3' -62.4 NC_001806.1 + 4057 0.69 0.439264
Target:  5'- aGCu-CGGgCGCCcacacGGCCGCCGGGGc -3'
miRNA:   3'- cUGuuGCCgGCGGa----CCGGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 76327 0.69 0.439264
Target:  5'- cGGCGGCGGCCGCCgagcuuguccgGGCa---GGGGUc -3'
miRNA:   3'- -CUGUUGCCGGCGGa----------CCGguggUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 77272 0.69 0.430585
Target:  5'- cGCggUGGCCGgggaCCUGGCC-CCAuGGGc -3'
miRNA:   3'- cUGuuGCCGGC----GGACCGGuGGU-CCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.