miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5607 3' -61.5 NC_001806.1 + 1457 0.71 0.366581
Target:  5'- gGGCCCCcgGGCCGUcgUCgUcGCCGCGc -3'
miRNA:   3'- -CUGGGGuaCCGGCG--AGgGuUGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 23068 0.71 0.374415
Target:  5'- aGGCCgCCGUGGCCGCcgUgCGcGCCGUGAg -3'
miRNA:   3'- -CUGG-GGUACCGGCGa-GgGU-UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 57379 0.71 0.381563
Target:  5'- cGGCCCgGUGGCUGUcguugcggagcaUCCCGcgccuugGCCGUGAu -3'
miRNA:   3'- -CUGGGgUACCGGCG------------AGGGU-------UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 16558 0.71 0.382362
Target:  5'- aAUCCCGUGGCCccaaucucaUCCCGGCUGCGu -3'
miRNA:   3'- cUGGGGUACCGGcg-------AGGGUUGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 77966 0.71 0.387992
Target:  5'- cGGCCCCggGGCCGCcgcucggacCCCAgagcuccacuaggcACCGCGu -3'
miRNA:   3'- -CUGGGGuaCCGGCGa--------GGGU--------------UGGCGCu -5'
5607 3' -61.5 NC_001806.1 + 147922 0.71 0.390421
Target:  5'- cGGCCCCucGGCCGC-CCCGccuCCGCu- -3'
miRNA:   3'- -CUGGGGuaCCGGCGaGGGUu--GGCGcu -5'
5607 3' -61.5 NC_001806.1 + 28154 0.71 0.390421
Target:  5'- cGGCCUgAgGGCCGCcCCCAG-CGCGAg -3'
miRNA:   3'- -CUGGGgUaCCGGCGaGGGUUgGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 22794 0.71 0.390421
Target:  5'- cGGCCgCGUGGCCGUcgagugCCUGGCCGCc- -3'
miRNA:   3'- -CUGGgGUACCGGCGa-----GGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 76627 0.71 0.397768
Target:  5'- aGACCCUgcugaagGUGGUCGCcgUCCCGgcgACCGUGGc -3'
miRNA:   3'- -CUGGGG-------UACCGGCG--AGGGU---UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 26425 0.71 0.39859
Target:  5'- cGGgCCCAcGGgCGCcgUCCCAACCGCa- -3'
miRNA:   3'- -CUgGGGUaCCgGCG--AGGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 148080 0.7 0.404372
Target:  5'- uGGCCCgAUGGgCGCcgaggggggcgcugUCCgAGCCGCGGc -3'
miRNA:   3'- -CUGGGgUACCgGCG--------------AGGgUUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 2693 0.7 0.406867
Target:  5'- gGGCCCCGggGGCUGCcgcCgCCAGCCGCc- -3'
miRNA:   3'- -CUGGGGUa-CCGGCGa--G-GGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 29387 0.7 0.415251
Target:  5'- uGACgCCCAgcgGGUCGUucagcaccaUCCCGAUCGUGAa -3'
miRNA:   3'- -CUG-GGGUa--CCGGCG---------AGGGUUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 87364 0.7 0.415251
Target:  5'- -cCCCCuccuccucUGGCCGCUCCUcguccucccgGGCUGCGGc -3'
miRNA:   3'- cuGGGGu-------ACCGGCGAGGG----------UUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 108538 0.7 0.432333
Target:  5'- cGGCCCgCGugcggcUGGCCGCgCCCGccgcuCCGCGGu -3'
miRNA:   3'- -CUGGG-GU------ACCGGCGaGGGUu----GGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 80115 0.7 0.441027
Target:  5'- cGGCCCCuguuuuaGGCCGCaaCCCGGCCGagcCGAc -3'
miRNA:   3'- -CUGGGGua-----CCGGCGa-GGGUUGGC---GCU- -5'
5607 3' -61.5 NC_001806.1 + 21918 0.69 0.458706
Target:  5'- gGGCCCgCGcGGCgGUggCCGGCCGCGAc -3'
miRNA:   3'- -CUGGG-GUaCCGgCGagGGUUGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 21562 0.69 0.467686
Target:  5'- gGACCCCAcggaccgccUGucGCCGCgcccgccggCCCAGCCGCc- -3'
miRNA:   3'- -CUGGGGU---------AC--CGGCGa--------GGGUUGGCGcu -5'
5607 3' -61.5 NC_001806.1 + 48964 0.69 0.476755
Target:  5'- cGGCCCC---GUCGCUCCCGuccauucccAUCGCGAg -3'
miRNA:   3'- -CUGGGGuacCGGCGAGGGU---------UGGCGCU- -5'
5607 3' -61.5 NC_001806.1 + 20043 0.69 0.485912
Target:  5'- cGGCCCUcUGcgacucCCGCUCCCGGuCCGCGu -3'
miRNA:   3'- -CUGGGGuACc-----GGCGAGGGUU-GGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.