Results 1 - 20 of 119 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 43269 | 0.66 | 0.689732 |
Target: 5'- uGAUCCgCGcGGCCGUUCCgCccucggaggcggAGCCGCGGc -3' miRNA: 3'- -CUGGG-GUaCCGGCGAGG-G------------UUGGCGCU- -5' |
|||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 103795 | 0.73 | 0.269022 |
Target: 5'- aGACCCCcgGGCgGCgccgCCgCGGCgGCGAc -3' miRNA: 3'- -CUGGGGuaCCGgCGa---GG-GUUGgCGCU- -5' |
|||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 26401 | 0.73 | 0.288016 |
Target: 5'- cGGCCCCc--GCCGCcCCCGGCCGCc- -3' miRNA: 3'- -CUGGGGuacCGGCGaGGGUUGGCGcu -5' |
|||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 90264 | 0.73 | 0.294577 |
Target: 5'- cGCCCC-UGGUCGUgggCCUGACCGUGGa -3' miRNA: 3'- cUGGGGuACCGGCGa--GGGUUGGCGCU- -5' |
|||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 132133 | 0.73 | 0.297234 |
Target: 5'- cGACCCUAUGGCCcuggcgGCgcgcguugccgagcaUCCCGACgCGCGGc -3' miRNA: 3'- -CUGGGGUACCGG------CG---------------AGGGUUG-GCGCU- -5' |
|||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 131868 | 0.73 | 0.301255 |
Target: 5'- aGGCCgUCGUGGCgGCcgCCCGcGCCGCGAc -3' miRNA: 3'- -CUGG-GGUACCGgCGa-GGGU-UGGCGCU- -5' |
|||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 57084 | 0.72 | 0.321985 |
Target: 5'- aGACUCCAcagaacaagGGCCGCUCCacCGGCCGCc- -3' miRNA: 3'- -CUGGGGUa--------CCGGCGAGG--GUUGGCGcu -5' |
|||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 32542 | 0.72 | 0.343763 |
Target: 5'- cGACCCCcUGGCgGuCUUCCAGCCGg-- -3' miRNA: 3'- -CUGGGGuACCGgC-GAGGGUUGGCgcu -5' |
|||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 107038 | 0.71 | 0.35886 |
Target: 5'- cGCCCgCggGGCCGCgggCUguGCCGCGGa -3' miRNA: 3'- cUGGG-GuaCCGGCGa--GGguUGGCGCU- -5' |
|||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 17622 | 0.73 | 0.269022 |
Target: 5'- gGACgCCGUGGCgUGCUUCCGACUGCu- -3' miRNA: 3'- -CUGgGGUACCG-GCGAGGGUUGGCGcu -5' |
|||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 23496 | 0.74 | 0.256929 |
Target: 5'- cGCCCCGUGGCCGUgucgCgCCGGCCcGcCGAg -3' miRNA: 3'- cUGGGGUACCGGCGa---G-GGUUGG-C-GCU- -5' |
|||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 1709 | 0.74 | 0.256929 |
Target: 5'- -uCCCCGaGGCCGCcgCCCGGCCGUc- -3' miRNA: 3'- cuGGGGUaCCGGCGa-GGGUUGGCGcu -5' |
|||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 33341 | 0.79 | 0.115089 |
Target: 5'- cGCCCCuUGGCCGC-CCCGGCUGCa- -3' miRNA: 3'- cUGGGGuACCGGCGaGGGUUGGCGcu -5' |
|||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 21148 | 0.78 | 0.144224 |
Target: 5'- gGGCCCCAccgacgGGCCGCcgCCCAccccgagcccagACCGCGAc -3' miRNA: 3'- -CUGGGGUa-----CCGGCGa-GGGU------------UGGCGCU- -5' |
|||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 151463 | 0.77 | 0.163192 |
Target: 5'- cGGCCgCG-GGCgCGCUCCUGACCGCGGg -3' miRNA: 3'- -CUGGgGUaCCG-GCGAGGGUUGGCGCU- -5' |
|||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 150069 | 0.75 | 0.20158 |
Target: 5'- -cCCCCaAUGGCCGCgcgUCCCAggggaggcaggcccACCGCGGg -3' miRNA: 3'- cuGGGG-UACCGGCG---AGGGU--------------UGGCGCU- -5' |
|||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 4620 | 0.75 | 0.207949 |
Target: 5'- uGACgCCgAUGGCCGC-CaCCGGCCGUGAc -3' miRNA: 3'- -CUG-GGgUACCGGCGaG-GGUUGGCGCU- -5' |
|||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 91352 | 0.74 | 0.233532 |
Target: 5'- gGACCCaCGUGGCgGCcaaCCCAcagguggACCGCGAg -3' miRNA: 3'- -CUGGG-GUACCGgCGa--GGGU-------UGGCGCU- -5' |
|||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 67180 | 0.74 | 0.245284 |
Target: 5'- uGGCCCCA-GGCCuCgCCCAGCCGCu- -3' miRNA: 3'- -CUGGGGUaCCGGcGaGGGUUGGCGcu -5' |
|||||||
5607 | 3' | -61.5 | NC_001806.1 | + | 144845 | 0.74 | 0.251051 |
Target: 5'- gGGCCCCGUccGGacCCGCUCgCCGGCaCGCGAc -3' miRNA: 3'- -CUGGGGUA--CC--GGCGAG-GGUUG-GCGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home