miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5607 5' -56.7 NC_001806.1 + 50355 0.66 0.883259
Target:  5'- cGUGCUGGaUGUGCUgGCGGUgAUGGc- -3'
miRNA:   3'- cUAUGGCC-AUACGG-CGCCGgUACCac -5'
5607 5' -56.7 NC_001806.1 + 30383 0.66 0.883259
Target:  5'- uGUGCCGGgcgcGUGCgacgguggcgCGCGGCUcgGGg- -3'
miRNA:   3'- cUAUGGCCa---UACG----------GCGCCGGuaCCac -5'
5607 5' -56.7 NC_001806.1 + 128045 0.66 0.883259
Target:  5'- cGAUGCCcGUGgcgGCCaCGGCCcccaGGUGg -3'
miRNA:   3'- -CUAUGGcCAUa--CGGcGCCGGua--CCAC- -5'
5607 5' -56.7 NC_001806.1 + 151576 0.66 0.861331
Target:  5'- cGAUGgCGGcg-GCgGCgGGCCAUGGa- -3'
miRNA:   3'- -CUAUgGCCauaCGgCG-CCGGUACCac -5'
5607 5' -56.7 NC_001806.1 + 36615 0.66 0.861331
Target:  5'- -uUGCUGGUGUGCa-UGGCCGUuucggccugccaGGUGg -3'
miRNA:   3'- cuAUGGCCAUACGgcGCCGGUA------------CCAC- -5'
5607 5' -56.7 NC_001806.1 + 4285 0.66 0.861331
Target:  5'- --cGCCGGggcUGCC-CGGCCGUGa-- -3'
miRNA:   3'- cuaUGGCCau-ACGGcGCCGGUACcac -5'
5607 5' -56.7 NC_001806.1 + 56637 0.66 0.861331
Target:  5'- --gGCCGGUGcgaccucaucgGCCgGCGGCcCGUGGg- -3'
miRNA:   3'- cuaUGGCCAUa----------CGG-CGCCG-GUACCac -5'
5607 5' -56.7 NC_001806.1 + 26965 0.66 0.861331
Target:  5'- --cGCCuGGcgcGCCGCGGCuCGUGGg- -3'
miRNA:   3'- cuaUGG-CCauaCGGCGCCG-GUACCac -5'
5607 5' -56.7 NC_001806.1 + 121408 0.67 0.843251
Target:  5'- --aGCCGGgcgcGUGCUGCgccuugggcccgggGGCC-UGGUGg -3'
miRNA:   3'- cuaUGGCCa---UACGGCG--------------CCGGuACCAC- -5'
5607 5' -56.7 NC_001806.1 + 62254 0.67 0.837542
Target:  5'- --gGCUGGg--GCCGCGGaauCCAUGGc- -3'
miRNA:   3'- cuaUGGCCauaCGGCGCC---GGUACCac -5'
5607 5' -56.7 NC_001806.1 + 31752 0.67 0.829229
Target:  5'- ---uCUGGUGUuaaccacagaGCCGCGGCCcgGGcUGc -3'
miRNA:   3'- cuauGGCCAUA----------CGGCGCCGGuaCC-AC- -5'
5607 5' -56.7 NC_001806.1 + 50095 0.67 0.812071
Target:  5'- ---gUCGGg--GCCGCGGCCGUGc-- -3'
miRNA:   3'- cuauGGCCauaCGGCGCCGGUACcac -5'
5607 5' -56.7 NC_001806.1 + 66837 0.67 0.811196
Target:  5'- --gGCCGGUGUgcGCCGCcuccuggGGCCcgGGc- -3'
miRNA:   3'- cuaUGGCCAUA--CGGCG-------CCGGuaCCac -5'
5607 5' -56.7 NC_001806.1 + 104694 0.67 0.803243
Target:  5'- --gGCCGGg--GaCGCGGCgGUGGUa -3'
miRNA:   3'- cuaUGGCCauaCgGCGCCGgUACCAc -5'
5607 5' -56.7 NC_001806.1 + 112228 0.68 0.78513
Target:  5'- cGAUACCuGGacaacgGCCGCcuGGCCAccagGGUGg -3'
miRNA:   3'- -CUAUGG-CCaua---CGGCG--CCGGUa---CCAC- -5'
5607 5' -56.7 NC_001806.1 + 146177 0.68 0.779585
Target:  5'- --gAUCGGUGgucaggcagcccggGCCGCGGCUcuGUGGUu -3'
miRNA:   3'- cuaUGGCCAUa-------------CGGCGCCGG--UACCAc -5'
5607 5' -56.7 NC_001806.1 + 77125 0.68 0.775862
Target:  5'- --cGCCGaGcggGCCGgGGCCGUGGa- -3'
miRNA:   3'- cuaUGGC-CauaCGGCgCCGGUACCac -5'
5607 5' -56.7 NC_001806.1 + 66797 0.68 0.764572
Target:  5'- cAUGCCGGgaggaucacgGCCGagcggggcCGGCCcgGGUGg -3'
miRNA:   3'- cUAUGGCCaua-------CGGC--------GCCGGuaCCAC- -5'
5607 5' -56.7 NC_001806.1 + 119692 0.68 0.75695
Target:  5'- uGGUACCGcaaaGCCGCGGUCGcUGGUc -3'
miRNA:   3'- -CUAUGGCcauaCGGCGCCGGU-ACCAc -5'
5607 5' -56.7 NC_001806.1 + 34414 0.68 0.747323
Target:  5'- --gGCCGGgccggGCCG-GGCCGggccgGGUGg -3'
miRNA:   3'- cuaUGGCCaua--CGGCgCCGGUa----CCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.