miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 5' -65 NC_001806.1 + 25539 0.76 0.127975
Target:  5'- cUGGGGCCGGGgagggcUGGGGCcggGGAGggCUGGg -3'
miRNA:   3'- -ACCCCGGCCC------GCCCCG---CCUUagGACC- -5'
5609 5' -65 NC_001806.1 + 25006 0.78 0.100153
Target:  5'- -cGGGCCGGGaCGGGGCGGGGcgCUUGu -3'
miRNA:   3'- acCCCGGCCC-GCCCCGCCUUa-GGACc -5'
5609 5' -65 NC_001806.1 + 4426 0.78 0.095319
Target:  5'- gGGGGuggcCCGGGCgGGGGCGGcGUCCgcccgGGg -3'
miRNA:   3'- aCCCC----GGCCCG-CCCCGCCuUAGGa----CC- -5'
5609 5' -65 NC_001806.1 + 111333 0.81 0.060752
Target:  5'- gGGGGUgGGGCGGGGgGGGGgguauauaaggCCUGGg -3'
miRNA:   3'- aCCCCGgCCCGCCCCgCCUUa----------GGACC- -5'
5609 5' -65 NC_001806.1 + 147784 0.84 0.037486
Target:  5'- gGGGGCCcgGGGCggGGGGCGGAG-CCUGGc -3'
miRNA:   3'- aCCCCGG--CCCG--CCCCGCCUUaGGACC- -5'
5609 5' -65 NC_001806.1 + 31378 0.74 0.162797
Target:  5'- gGGGGUCGGGCGcuGGGUGGuc-UCUGGc -3'
miRNA:   3'- aCCCCGGCCCGC--CCCGCCuuaGGACC- -5'
5609 5' -65 NC_001806.1 + 92901 0.74 0.16553
Target:  5'- cUGcGGCCgcgugguccgcgcaGGGCGGGGCGGg--CCUGGa -3'
miRNA:   3'- -ACcCCGG--------------CCCGCCCCGCCuuaGGACC- -5'
5609 5' -65 NC_001806.1 + 2804 0.73 0.205918
Target:  5'- cGcGGGCUGGGCgGGGGCGGGcucgggCCccgGGg -3'
miRNA:   3'- aC-CCCGGCCCG-CCCCGCCUua----GGa--CC- -5'
5609 5' -65 NC_001806.1 + 83278 0.73 0.205918
Target:  5'- gGGGGuUCGGGCGGGcGCGGAGgaccCCg-- -3'
miRNA:   3'- aCCCC-GGCCCGCCC-CGCCUUa---GGacc -5'
5609 5' -65 NC_001806.1 + 84256 0.73 0.196568
Target:  5'- gGGGGCgCGGGCGcaccGGCGGAGaaugCCUGc -3'
miRNA:   3'- aCCCCG-GCCCGCc---CCGCCUUa---GGACc -5'
5609 5' -65 NC_001806.1 + 143135 0.73 0.196568
Target:  5'- aGGGGCCGcGGauGGGCGGGccuaCUUGGu -3'
miRNA:   3'- aCCCCGGC-CCgcCCCGCCUua--GGACC- -5'
5609 5' -65 NC_001806.1 + 62245 0.73 0.196568
Target:  5'- gGGGGagaGGGCuGGGGCcgcGGAAUCCaUGGc -3'
miRNA:   3'- aCCCCgg-CCCG-CCCCG---CCUUAGG-ACC- -5'
5609 5' -65 NC_001806.1 + 151568 0.74 0.187591
Target:  5'- gGGGGCCGcgauGGCGGcGGCGGcgggCCaUGGa -3'
miRNA:   3'- aCCCCGGC----CCGCC-CCGCCuua-GG-ACC- -5'
5609 5' -65 NC_001806.1 + 32953 0.74 0.187591
Target:  5'- gUGGGGCCccGGGcCGGGGCcccuuGggUCCgccgGGg -3'
miRNA:   3'- -ACCCCGG--CCC-GCCCCGc----CuuAGGa---CC- -5'
5609 5' -65 NC_001806.1 + 10697 0.74 0.183239
Target:  5'- aUGGGGCCGGG-GGGGCGuAcgCCa-- -3'
miRNA:   3'- -ACCCCGGCCCgCCCCGCcUuaGGacc -5'
5609 5' -65 NC_001806.1 + 38812 0.74 0.178977
Target:  5'- cGGGGacCCGGGCGGGGgUGGAuacgCUGGc -3'
miRNA:   3'- aCCCC--GGCCCGCCCC-GCCUuag-GACC- -5'
5609 5' -65 NC_001806.1 + 19101 0.74 0.178977
Target:  5'- uUGGGGCCGa-CGGGGUGGGggCCcGGg -3'
miRNA:   3'- -ACCCCGGCccGCCCCGCCUuaGGaCC- -5'
5609 5' -65 NC_001806.1 + 10490 0.74 0.178977
Target:  5'- cUGGGGUCggGGGUGGGGuCGGAa--CUGGg -3'
miRNA:   3'- -ACCCCGG--CCCGCCCC-GCCUuagGACC- -5'
5609 5' -65 NC_001806.1 + 86038 0.74 0.170716
Target:  5'- -aGGGCCgcGGGgGGGGCGGGcucGUCCccUGGg -3'
miRNA:   3'- acCCCGG--CCCgCCCCGCCU---UAGG--ACC- -5'
5609 5' -65 NC_001806.1 + 56679 0.74 0.170716
Target:  5'- gGGGGUCGGG-GGGGaCGGGggCCcGGg -3'
miRNA:   3'- aCCCCGGCCCgCCCC-GCCUuaGGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.