miRNA display CGI


Results 41 - 60 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 5' -65 NC_001806.1 + 11816 0.71 0.270348
Target:  5'- gGGGGUgGaGGUgguggucgagGGGGUGGAggCCUGGu -3'
miRNA:   3'- aCCCCGgC-CCG----------CCCCGCCUuaGGACC- -5'
5609 5' -65 NC_001806.1 + 29110 0.71 0.276392
Target:  5'- cUGGGGCCGcagggcguggauGGgGGGGCGGucUCggGGg -3'
miRNA:   3'- -ACCCCGGC------------CCgCCCCGCCuuAGgaCC- -5'
5609 5' -65 NC_001806.1 + 2942 0.71 0.282544
Target:  5'- gGGcGGCCGGGCcGGGCcGGGAcUCUUGc -3'
miRNA:   3'- aCC-CCGGCCCGcCCCG-CCUU-AGGACc -5'
5609 5' -65 NC_001806.1 + 2847 0.71 0.288805
Target:  5'- gGGGGCgCGGGCgcggggaggGGGGCGcGGgcGUCCgagccgGGg -3'
miRNA:   3'- aCCCCG-GCCCG---------CCCCGC-CU--UAGGa-----CC- -5'
5609 5' -65 NC_001806.1 + 37932 0.71 0.288805
Target:  5'- cGGGGCCGuccGUccaccccgccccGGGGCGGggUCCcccaGGg -3'
miRNA:   3'- aCCCCGGCc--CG------------CCCCGCCuuAGGa---CC- -5'
5609 5' -65 NC_001806.1 + 93275 0.71 0.288805
Target:  5'- cGGGGCauuaucuccgaGGGCGGGGCGGccgucgCCa-- -3'
miRNA:   3'- aCCCCGg----------CCCGCCCCGCCuua---GGacc -5'
5609 5' -65 NC_001806.1 + 38872 0.7 0.295173
Target:  5'- uUGGGaCCcauGGGCGGGGUcguuGGGAUCCaGGc -3'
miRNA:   3'- -ACCCcGG---CCCGCCCCG----CCUUAGGaCC- -5'
5609 5' -65 NC_001806.1 + 6078 0.7 0.295173
Target:  5'- cGGGGgCGGGCccgggcggcggGGGGCGGGucucUCC-GGc -3'
miRNA:   3'- aCCCCgGCCCG-----------CCCCGCCUu---AGGaCC- -5'
5609 5' -65 NC_001806.1 + 95383 0.7 0.301651
Target:  5'- gGGGGuuGGGagcucccgGGGGCGGGggCgaGGa -3'
miRNA:   3'- aCCCCggCCCg-------CCCCGCCUuaGgaCC- -5'
5609 5' -65 NC_001806.1 + 2764 0.7 0.301651
Target:  5'- cGGGGCgCGGGCGGgccugcgccgcGGCGGc--CCgGGg -3'
miRNA:   3'- aCCCCG-GCCCGCC-----------CCGCCuuaGGaCC- -5'
5609 5' -65 NC_001806.1 + 21199 0.7 0.308237
Target:  5'- gGGGGCCcucGGGUGGGGCGcGGAgac-GGa -3'
miRNA:   3'- aCCCCGG---CCCGCCCCGC-CUUaggaCC- -5'
5609 5' -65 NC_001806.1 + 149803 0.7 0.319685
Target:  5'- gGGGGCggcccucaggccggCGGGUacucgcuccGGGGCGGGGcUCCaUGGg -3'
miRNA:   3'- aCCCCG--------------GCCCG---------CCCCGCCUU-AGG-ACC- -5'
5609 5' -65 NC_001806.1 + 34762 0.7 0.321738
Target:  5'- gGGGGCaaagccGGCGGGGCGGu-UCggGGg -3'
miRNA:   3'- aCCCCGgc----CCGCCCCGCCuuAGgaCC- -5'
5609 5' -65 NC_001806.1 + 37801 0.7 0.321738
Target:  5'- gGGGGUccgCGGGCGGGGgGGcAAUCg--- -3'
miRNA:   3'- aCCCCG---GCCCGCCCCgCC-UUAGgacc -5'
5609 5' -65 NC_001806.1 + 44793 0.7 0.328653
Target:  5'- gUGaGGGCCGGG-GGGGUcgccaGGAuGUCCaGGa -3'
miRNA:   3'- -AC-CCCGGCCCgCCCCG-----CCU-UAGGaCC- -5'
5609 5' -65 NC_001806.1 + 66856 0.7 0.333558
Target:  5'- cUGGGGcCCGGGCacacGGCGGuGacgcucgcuagcucGUCCUGGg -3'
miRNA:   3'- -ACCCC-GGCCCGcc--CCGCC-U--------------UAGGACC- -5'
5609 5' -65 NC_001806.1 + 57034 0.7 0.335676
Target:  5'- gGGuGGCCGGGCccGGGGCcGGGGcCCccGGc -3'
miRNA:   3'- aCC-CCGGCCCG--CCCCG-CCUUaGGa-CC- -5'
5609 5' -65 NC_001806.1 + 151223 0.69 0.35005
Target:  5'- aGGGGCgCGaGGgGGGGUGGGAg---GGg -3'
miRNA:   3'- aCCCCG-GC-CCgCCCCGCCUUaggaCC- -5'
5609 5' -65 NC_001806.1 + 5487 0.69 0.357399
Target:  5'- aGGGGCC-GGCGGGaaggaggagcaGCGGAggCCgccGGc -3'
miRNA:   3'- aCCCCGGcCCGCCC-----------CGCCUuaGGa--CC- -5'
5609 5' -65 NC_001806.1 + 23945 0.69 0.357399
Target:  5'- cGGGGCCuGGgGGGGCcgccGGAgugGUCCg-- -3'
miRNA:   3'- aCCCCGGcCCgCCCCG----CCU---UAGGacc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.