miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 5' -65 NC_001806.1 + 25301 0.69 0.364856
Target:  5'- aGGGGCgggaggGGGCgaGGGGCGGGAgggggCgaGGg -3'
miRNA:   3'- aCCCCGg-----CCCG--CCCCGCCUUa----GgaCC- -5'
5609 5' -65 NC_001806.1 + 25352 0.69 0.364856
Target:  5'- aGGGGCgggaggGGGCgaGGGGCGGGAgggggCgaGGg -3'
miRNA:   3'- aCCCCGg-----CCCG--CCCCGCCUUa----GgaCC- -5'
5609 5' -65 NC_001806.1 + 25539 0.76 0.127975
Target:  5'- cUGGGGCCGGGgagggcUGGGGCcggGGAGggCUGGg -3'
miRNA:   3'- -ACCCCGGCCC------GCCCCG---CCUUagGACC- -5'
5609 5' -65 NC_001806.1 + 25587 0.76 0.127975
Target:  5'- cUGGGGCCGGGgagggcUGGGGCcggGGAGggCUGGg -3'
miRNA:   3'- -ACCCCGGCCC------GCCCCG---CCUUagGACC- -5'
5609 5' -65 NC_001806.1 + 25621 0.69 0.37242
Target:  5'- -nGGGCCGGGgagggcUGGGGCuggGGAGggCUGGg -3'
miRNA:   3'- acCCCGGCCC------GCCCCG---CCUUagGACC- -5'
5609 5' -65 NC_001806.1 + 25953 0.66 0.497738
Target:  5'- cGGGGCCgcgGGaGCGGGG-GGAGgagCggGGg -3'
miRNA:   3'- aCCCCGG---CC-CGCCCCgCCUUa--GgaCC- -5'
5609 5' -65 NC_001806.1 + 26704 0.66 0.5159
Target:  5'- cGuGGGCCcgggGGGCGGGGCuGAccCCUc- -3'
miRNA:   3'- aC-CCCGG----CCCGCCCCGcCUuaGGAcc -5'
5609 5' -65 NC_001806.1 + 27019 0.66 0.526003
Target:  5'- cGGcGCCGGGUGGcggaggccgaGGCGGucaucgggccgugCCUGGg -3'
miRNA:   3'- aCCcCGGCCCGCC----------CCGCCuua----------GGACC- -5'
5609 5' -65 NC_001806.1 + 27331 0.68 0.428267
Target:  5'- cGGGGCCcGGCccauuGGGCGGGAguuaccgCCcaaUGGg -3'
miRNA:   3'- aCCCCGGcCCGc----CCCGCCUUa------GG---ACC- -5'
5609 5' -65 NC_001806.1 + 28184 0.72 0.241713
Target:  5'- aGGGGCCGGGCgccaugucuGGGGCGccauaUUGGg -3'
miRNA:   3'- aCCCCGGCCCG---------CCCCGCcuuagGACC- -5'
5609 5' -65 NC_001806.1 + 28308 0.66 0.506784
Target:  5'- cGGGaGCCGGGCgccauguuGGGGCgccauguuaGGGggCgUGGa -3'
miRNA:   3'- aCCC-CGGCCCG--------CCCCG---------CCUuaGgACC- -5'
5609 5' -65 NC_001806.1 + 29020 0.66 0.543623
Target:  5'- gUGGGG--GGGCGGGG-GGAcgCCg-- -3'
miRNA:   3'- -ACCCCggCCCGCCCCgCCUuaGGacc -5'
5609 5' -65 NC_001806.1 + 29110 0.71 0.276392
Target:  5'- cUGGGGCCGcagggcguggauGGgGGGGCGGucUCggGGg -3'
miRNA:   3'- -ACCCCGGC------------CCgCCCCGCCuuAGgaCC- -5'
5609 5' -65 NC_001806.1 + 29695 0.67 0.453669
Target:  5'- gGcGGGCCGGGgagGGGGCGuAA-CCUGa -3'
miRNA:   3'- aC-CCCGGCCCg--CCCCGCcUUaGGACc -5'
5609 5' -65 NC_001806.1 + 30014 0.68 0.411806
Target:  5'- uUGGGGuuGuugaagcggaGGCGGGGCGG---CCgagGGg -3'
miRNA:   3'- -ACCCCggC----------CCGCCCCGCCuuaGGa--CC- -5'
5609 5' -65 NC_001806.1 + 30419 0.72 0.24723
Target:  5'- gGGGGCCGGGCGuggaGGGUGGGca-CgGGc -3'
miRNA:   3'- aCCCCGGCCCGC----CCCGCCUuagGaCC- -5'
5609 5' -65 NC_001806.1 + 30636 0.69 0.38009
Target:  5'- -aGGGCCGGGgGGGcGCGG---CCaGGg -3'
miRNA:   3'- acCCCGGCCCgCCC-CGCCuuaGGaCC- -5'
5609 5' -65 NC_001806.1 + 31378 0.74 0.162797
Target:  5'- gGGGGUCGGGCGcuGGGUGGuc-UCUGGc -3'
miRNA:   3'- aCCCCGGCCCGC--CCCGCCuuaGGACC- -5'
5609 5' -65 NC_001806.1 + 31957 0.68 0.387864
Target:  5'- aGGGGU--GGCGGGGCGGGAcg--GGg -3'
miRNA:   3'- aCCCCGgcCCGCCCCGCCUUaggaCC- -5'
5609 5' -65 NC_001806.1 + 32011 0.69 0.364856
Target:  5'- gUGGGuGUUgggGGGUGGGGCGGAGgggUGGg -3'
miRNA:   3'- -ACCC-CGG---CCCGCCCCGCCUUaggACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.