miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 5' -65 NC_001806.1 + 14379 0.68 0.428267
Target:  5'- gGGGGCUGGGgugaggggacacUGGGGCgugcguuaaGGggUCCg-- -3'
miRNA:   3'- aCCCCGGCCC------------GCCCCG---------CCuuAGGacc -5'
5609 5' -65 NC_001806.1 + 15396 0.66 0.543623
Target:  5'- uUGGGGuuGGGUGGuGGaGGAGaCgUUGGu -3'
miRNA:   3'- -ACCCCggCCCGCC-CCgCCUUaG-GACC- -5'
5609 5' -65 NC_001806.1 + 15857 0.68 0.436641
Target:  5'- uUGGGGCCGcGG-GGGGCcgagaacaaGGAcgcGUUgUGGa -3'
miRNA:   3'- -ACCCCGGC-CCgCCCCG---------CCU---UAGgACC- -5'
5609 5' -65 NC_001806.1 + 16866 0.66 0.543623
Target:  5'- gGGGGUCuccggGGGCGGGGaguccaGGcacgcGUCCUcGGc -3'
miRNA:   3'- aCCCCGG-----CCCGCCCCg-----CCu----UAGGA-CC- -5'
5609 5' -65 NC_001806.1 + 19101 0.74 0.178977
Target:  5'- uUGGGGCCGa-CGGGGUGGGggCCcGGg -3'
miRNA:   3'- -ACCCCGGCccGCCCCGCCUuaGGaCC- -5'
5609 5' -65 NC_001806.1 + 19363 0.66 0.5159
Target:  5'- gGGGGCCcuacGGccaccgauGCGGGG-GGcuucAUCCUGGu -3'
miRNA:   3'- aCCCCGG----CC--------CGCCCCgCCu---UAGGACC- -5'
5609 5' -65 NC_001806.1 + 20667 0.72 0.24723
Target:  5'- cGGcGuGCCGGcGuCGGGGCGGggUCgUGc -3'
miRNA:   3'- aCC-C-CGGCC-C-GCCCCGCCuuAGgACc -5'
5609 5' -65 NC_001806.1 + 20717 0.71 0.270348
Target:  5'- gUGGGcccGCCGGG-GGGGCGGGGggCCggcGGc -3'
miRNA:   3'- -ACCC---CGGCCCgCCCCGCCUUa-GGa--CC- -5'
5609 5' -65 NC_001806.1 + 21199 0.7 0.308237
Target:  5'- gGGGGCCcucGGGUGGGGCGcGGAgac-GGa -3'
miRNA:   3'- aCCCCGG---CCCGCCCCGC-CUUaggaCC- -5'
5609 5' -65 NC_001806.1 + 21757 0.68 0.428267
Target:  5'- cGaGGCgCGGGCcgucGGGCGGggUCCg-- -3'
miRNA:   3'- aCcCCG-GCCCGc---CCCGCCuuAGGacc -5'
5609 5' -65 NC_001806.1 + 22062 0.72 0.249466
Target:  5'- cGGcGCCGGGCccccgcccccGGGGCGGGugcuguacggcggCCUGGg -3'
miRNA:   3'- aCCcCGGCCCG----------CCCCGCCUua-----------GGACC- -5'
5609 5' -65 NC_001806.1 + 22437 0.67 0.488764
Target:  5'- cUGGGGCCuGGCGcacgcGGCGGccgCCgUGGc -3'
miRNA:   3'- -ACCCCGGcCCGCc----CCGCCuuaGG-ACC- -5'
5609 5' -65 NC_001806.1 + 23945 0.69 0.357399
Target:  5'- cGGGGCCuGGgGGGGCcgccGGAgugGUCCg-- -3'
miRNA:   3'- aCCCCGGcCCgCCCCG----CCU---UAGGacc -5'
5609 5' -65 NC_001806.1 + 24530 0.66 0.525081
Target:  5'- cUGGacGGCCGGGCGGcGGCcucGGGGaCCa-- -3'
miRNA:   3'- -ACC--CCGGCCCGCC-CCG---CCUUaGGacc -5'
5609 5' -65 NC_001806.1 + 24880 0.75 0.155211
Target:  5'- gGGGGCCGuGGaggugcugGGGGCGGAGgcgggCUUGGc -3'
miRNA:   3'- aCCCCGGC-CCg-------CCCCGCCUUa----GGACC- -5'
5609 5' -65 NC_001806.1 + 25006 0.78 0.100153
Target:  5'- -cGGGCCGGGaCGGGGCGGGGcgCUUGu -3'
miRNA:   3'- acCCCGGCCC-GCCCCGCCUUa-GGACc -5'
5609 5' -65 NC_001806.1 + 25097 0.69 0.364856
Target:  5'- aGGGGCgggaggGGGCgaGGGGCGGGAgggggCgaGGg -3'
miRNA:   3'- aCCCCGg-----CCCG--CCCCGCCUUa----GgaCC- -5'
5609 5' -65 NC_001806.1 + 25148 0.69 0.364856
Target:  5'- aGGGGCgggaggGGGCgaGGGGCGGGAgggggCgaGGg -3'
miRNA:   3'- aCCCCGg-----CCCG--CCCCGCCUUa----GgaCC- -5'
5609 5' -65 NC_001806.1 + 25199 0.69 0.364856
Target:  5'- aGGGGCgggaggGGGCgaGGGGCGGGAgggggCgaGGg -3'
miRNA:   3'- aCCCCGg-----CCCG--CCCCGCCUUa----GgaCC- -5'
5609 5' -65 NC_001806.1 + 25250 0.69 0.364856
Target:  5'- aGGGGCgggaggGGGCgaGGGGCGGGAgggggCgaGGg -3'
miRNA:   3'- aCCCCGg-----CCCG--CCCCGCCUUa----GgaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.