miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 5' -65 NC_001806.1 + 111333 0.81 0.060752
Target:  5'- gGGGGUgGGGCGGGGgGGGGgguauauaaggCCUGGg -3'
miRNA:   3'- aCCCCGgCCCGCCCCgCCUUa----------GGACC- -5'
5609 5' -65 NC_001806.1 + 111223 0.66 0.510422
Target:  5'- cGGGGCCucgauguggGuGGCGGcGGCGGAcagcuuugccGccucugccaauuucuUCCUGGc -3'
miRNA:   3'- aCCCCGG---------C-CCGCC-CCGCCU----------U---------------AGGACC- -5'
5609 5' -65 NC_001806.1 + 109537 0.67 0.462317
Target:  5'- cGGGaGCCGGG-GGaGGUGcg--CCUGGg -3'
miRNA:   3'- aCCC-CGGCCCgCC-CCGCcuuaGGACC- -5'
5609 5' -65 NC_001806.1 + 109232 1.1 0.000456
Target:  5'- gUGGGGCCGGGCGGGGCGGAAUCCUGGg -3'
miRNA:   3'- -ACCCCGGCCCGCCCCGCCUUAGGACC- -5'
5609 5' -65 NC_001806.1 + 100384 0.69 0.364856
Target:  5'- cGucGCCGGGCGGcGCGGGggCCgGGg -3'
miRNA:   3'- aCccCGGCCCGCCcCGCCUuaGGaCC- -5'
5609 5' -65 NC_001806.1 + 99612 0.68 0.419165
Target:  5'- aGGGGCgcgcgucUGGGUggaaggacaugGGGGCGGuggcgggCCUGGc -3'
miRNA:   3'- aCCCCG-------GCCCG-----------CCCCGCCuua----GGACC- -5'
5609 5' -65 NC_001806.1 + 96395 0.66 0.538037
Target:  5'- gGGGcGCCggugguucgucguauGGGCgcucuuGGGGUugacgcugGGggUCCUGGu -3'
miRNA:   3'- aCCC-CGG---------------CCCG------CCCCG--------CCuuAGGACC- -5'
5609 5' -65 NC_001806.1 + 95383 0.7 0.301651
Target:  5'- gGGGGuuGGGagcucccgGGGGCGGGggCgaGGa -3'
miRNA:   3'- aCCCCggCCCg-------CCCCGCCUuaGgaCC- -5'
5609 5' -65 NC_001806.1 + 95295 0.66 0.506784
Target:  5'- aUGGGGgCGGGgGGcgcGGCGGAcgcgCCcaaGGg -3'
miRNA:   3'- -ACCCCgGCCCgCC---CCGCCUua--GGa--CC- -5'
5609 5' -65 NC_001806.1 + 93706 0.71 0.270348
Target:  5'- aGGGGuuGGGgGGuGGgGGAA-CCUaGGg -3'
miRNA:   3'- aCCCCggCCCgCC-CCgCCUUaGGA-CC- -5'
5609 5' -65 NC_001806.1 + 93275 0.71 0.288805
Target:  5'- cGGGGCauuaucuccgaGGGCGGGGCGGccgucgCCa-- -3'
miRNA:   3'- aCCCCGg----------CCCGCCCCGCCuua---GGacc -5'
5609 5' -65 NC_001806.1 + 92901 0.74 0.16553
Target:  5'- cUGcGGCCgcgugguccgcgcaGGGCGGGGCGGg--CCUGGa -3'
miRNA:   3'- -ACcCCGG--------------CCCGCCCCGCCuuaGGACC- -5'
5609 5' -65 NC_001806.1 + 89779 0.67 0.453669
Target:  5'- cGGGGCgugggagGGGCuGGGGCGGA--CC-GGc -3'
miRNA:   3'- aCCCCGg------CCCG-CCCCGCCUuaGGaCC- -5'
5609 5' -65 NC_001806.1 + 86038 0.74 0.170716
Target:  5'- -aGGGCCgcGGGgGGGGCGGGcucGUCCccUGGg -3'
miRNA:   3'- acCCCGG--CCCgCCCCGCCU---UAGG--ACC- -5'
5609 5' -65 NC_001806.1 + 84256 0.73 0.196568
Target:  5'- gGGGGCgCGGGCGcaccGGCGGAGaaugCCUGc -3'
miRNA:   3'- aCCCCG-GCCCGCc---CCGCCUUa---GGACc -5'
5609 5' -65 NC_001806.1 + 83817 0.75 0.14443
Target:  5'- gGGGGCgGGGuCGGcGCGGGAUCC-GGc -3'
miRNA:   3'- aCCCCGgCCC-GCCcCGCCUUAGGaCC- -5'
5609 5' -65 NC_001806.1 + 83278 0.73 0.205918
Target:  5'- gGGGGuUCGGGCGGGcGCGGAGgaccCCg-- -3'
miRNA:   3'- aCCCC-GGCCCGCCC-CGCCUUa---GGacc -5'
5609 5' -65 NC_001806.1 + 79267 0.73 0.210736
Target:  5'- uUGGGGCggaGGGCucguuGGGGCccGGAAgCCUGGc -3'
miRNA:   3'- -ACCCCGg--CCCG-----CCCCG--CCUUaGGACC- -5'
5609 5' -65 NC_001806.1 + 77249 0.66 0.496837
Target:  5'- gGGGGCCuguuGGCGGaauucgacgcgguGGcCGGGGaCCUGGc -3'
miRNA:   3'- aCCCCGGc---CCGCC-------------CC-GCCUUaGGACC- -5'
5609 5' -65 NC_001806.1 + 71529 0.68 0.436641
Target:  5'- gUGcGGG-CGGGCGGGGgGGGGgg-UGGa -3'
miRNA:   3'- -AC-CCCgGCCCGCCCCgCCUUaggACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.