miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 5' -65 NC_001806.1 + 151568 0.74 0.187591
Target:  5'- gGGGGCCGcgauGGCGGcGGCGGcgggCCaUGGa -3'
miRNA:   3'- aCCCCGGC----CCGCC-CCGCCuua-GG-ACC- -5'
5609 5' -65 NC_001806.1 + 151447 0.75 0.150092
Target:  5'- gGGGGCgGcGGCGGGGCGGccgcgggcgcgcUCCUGa -3'
miRNA:   3'- aCCCCGgC-CCGCCCCGCCuu----------AGGACc -5'
5609 5' -65 NC_001806.1 + 151288 0.76 0.137628
Target:  5'- cGGGGCCgggGGGCGGcGGCGGugggCCgGGc -3'
miRNA:   3'- aCCCCGG---CCCGCC-CCGCCuua-GGaCC- -5'
5609 5' -65 NC_001806.1 + 151223 0.69 0.35005
Target:  5'- aGGGGCgCGaGGgGGGGUGGGAg---GGg -3'
miRNA:   3'- aCCCCG-GC-CCgCCCCGCCUUaggaCC- -5'
5609 5' -65 NC_001806.1 + 149803 0.7 0.319685
Target:  5'- gGGGGCggcccucaggccggCGGGUacucgcuccGGGGCGGGGcUCCaUGGg -3'
miRNA:   3'- aCCCCG--------------GCCCG---------CCCCGCCUU-AGG-ACC- -5'
5609 5' -65 NC_001806.1 + 149022 0.66 0.538037
Target:  5'- cGGGG-CGGGCuaaggggaaaaaaggGGGGCGGGuaagaaUGGg -3'
miRNA:   3'- aCCCCgGCCCG---------------CCCCGCCUuagg--ACC- -5'
5609 5' -65 NC_001806.1 + 148087 0.66 0.543623
Target:  5'- aUGGGcGCCGaGG-GGGGCGcuGUCCg-- -3'
miRNA:   3'- -ACCC-CGGC-CCgCCCCGCcuUAGGacc -5'
5609 5' -65 NC_001806.1 + 147826 0.71 0.258
Target:  5'- gGGGGCCuguGGGgagaggcCGGGGgGGAGUCgCUGa -3'
miRNA:   3'- aCCCCGG---CCC-------GCCCCgCCUUAG-GACc -5'
5609 5' -65 NC_001806.1 + 147784 0.84 0.037486
Target:  5'- gGGGGCCcgGGGCggGGGGCGGAG-CCUGGc -3'
miRNA:   3'- aCCCCGG--CCCG--CCCCGCCUUaGGACC- -5'
5609 5' -65 NC_001806.1 + 147685 0.75 0.147945
Target:  5'- gGGGGCCGGGgcgcgGGGGCGGGccCC-GGa -3'
miRNA:   3'- aCCCCGGCCCg----CCCCGCCUuaGGaCC- -5'
5609 5' -65 NC_001806.1 + 147637 0.66 0.506784
Target:  5'- cUGGGGCacaCGGcgcgcguccGCGGGGCGGGcggCC-GGc -3'
miRNA:   3'- -ACCCCG---GCC---------CGCCCCGCCUua-GGaCC- -5'
5609 5' -65 NC_001806.1 + 147487 0.67 0.488764
Target:  5'- gGGGaGCgGGGCggcgccggagGGGGCGGcg-CCgcgGGa -3'
miRNA:   3'- aCCC-CGgCCCG----------CCCCGCCuuaGGa--CC- -5'
5609 5' -65 NC_001806.1 + 145647 0.68 0.411806
Target:  5'- cGGGuGCCGGGggacCGGGGUG--AUCuCUGGc -3'
miRNA:   3'- aCCC-CGGCCC----GCCCCGCcuUAG-GACC- -5'
5609 5' -65 NC_001806.1 + 143135 0.73 0.196568
Target:  5'- aGGGGCCGcGGauGGGCGGGccuaCUUGGu -3'
miRNA:   3'- aCCCCGGC-CCgcCCCGCCUua--GGACC- -5'
5609 5' -65 NC_001806.1 + 133341 0.66 0.497738
Target:  5'- cUGGaGCCaGGCGGGaGUGuGGUUCUGGa -3'
miRNA:   3'- -ACCcCGGcCCGCCC-CGCcUUAGGACC- -5'
5609 5' -65 NC_001806.1 + 126243 0.66 0.543623
Target:  5'- cGGGGauGGuCGGGGCGuc--CCUGGa -3'
miRNA:   3'- aCCCCggCCcGCCCCGCcuuaGGACC- -5'
5609 5' -65 NC_001806.1 + 121405 0.68 0.394951
Target:  5'- cGGaGCCGGGCGcgugcugcgccuuGGGCccGGGggCCUGGu -3'
miRNA:   3'- aCCcCGGCCCGC-------------CCCG--CCUuaGGACC- -5'
5609 5' -65 NC_001806.1 + 120322 0.66 0.534324
Target:  5'- gGGGGaCgGGGCGGucgggggcGGCGGGucGUCCc-- -3'
miRNA:   3'- aCCCC-GgCCCGCC--------CCGCCU--UAGGacc -5'
5609 5' -65 NC_001806.1 + 113403 0.68 0.428267
Target:  5'- cGGGGCCuGGaGCugGGGGUGGGAcgCCa-- -3'
miRNA:   3'- aCCCCGG-CC-CG--CCCCGCCUUa-GGacc -5'
5609 5' -65 NC_001806.1 + 111546 0.72 0.230985
Target:  5'- gGGuGGCCGGGCguuGGGGUGGAucuuagCCUccccGGg -3'
miRNA:   3'- aCC-CCGGCCCG---CCCCGCCUua----GGA----CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.