miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 5' -65 NC_001806.1 + 2764 0.7 0.301651
Target:  5'- cGGGGCgCGGGCGGgccugcgccgcGGCGGc--CCgGGg -3'
miRNA:   3'- aCCCCG-GCCCGCC-----------CCGCCuuaGGaCC- -5'
5609 5' -65 NC_001806.1 + 2804 0.73 0.205918
Target:  5'- cGcGGGCUGGGCgGGGGCGGGcucgggCCccgGGg -3'
miRNA:   3'- aC-CCCGGCCCG-CCCCGCCUua----GGa--CC- -5'
5609 5' -65 NC_001806.1 + 2847 0.71 0.288805
Target:  5'- gGGGGCgCGGGCgcggggaggGGGGCGcGGgcGUCCgagccgGGg -3'
miRNA:   3'- aCCCCG-GCCCG---------CCCCGC-CU--UAGGa-----CC- -5'
5609 5' -65 NC_001806.1 + 2942 0.71 0.282544
Target:  5'- gGGcGGCCGGGCcGGGCcGGGAcUCUUGc -3'
miRNA:   3'- aCC-CCGGCCCGcCCCG-CCUU-AGGACc -5'
5609 5' -65 NC_001806.1 + 3544 0.66 0.525081
Target:  5'- gGGGGaggCGGGCGcGGCGGAcagCCgccccaGGg -3'
miRNA:   3'- aCCCCg--GCCCGCcCCGCCUua-GGa-----CC- -5'
5609 5' -65 NC_001806.1 + 4426 0.78 0.095319
Target:  5'- gGGGGuggcCCGGGCgGGGGCGGcGUCCgcccgGGg -3'
miRNA:   3'- aCCCC----GGCCCG-CCCCGCCuUAGGa----CC- -5'
5609 5' -65 NC_001806.1 + 4666 0.69 0.38009
Target:  5'- -uGGGCCGG-CGGGcGCGGcgacaggcGGUCCgUGGg -3'
miRNA:   3'- acCCCGGCCcGCCC-CGCC--------UUAGG-ACC- -5'
5609 5' -65 NC_001806.1 + 4821 0.67 0.462317
Target:  5'- gGGGGuCCGGggcggcgaggccGCGGGGuCGGGcgUCgGGa -3'
miRNA:   3'- aCCCC-GGCC------------CGCCCC-GCCUuaGGaCC- -5'
5609 5' -65 NC_001806.1 + 5487 0.69 0.357399
Target:  5'- aGGGGCC-GGCGGGaaggaggagcaGCGGAggCCgccGGc -3'
miRNA:   3'- aCCCCGGcCCGCCC-----------CGCCUuaGGa--CC- -5'
5609 5' -65 NC_001806.1 + 5662 0.68 0.395743
Target:  5'- -uGGGCgGGGCGcgaGGGCGGGuggGUCCg-- -3'
miRNA:   3'- acCCCGgCCCGC---CCCGCCU---UAGGacc -5'
5609 5' -65 NC_001806.1 + 6078 0.7 0.295173
Target:  5'- cGGGGgCGGGCccgggcggcggGGGGCGGGucucUCC-GGc -3'
miRNA:   3'- aCCCCgGCCCG-----------CCCCGCCUu---AGGaCC- -5'
5609 5' -65 NC_001806.1 + 9232 0.68 0.394951
Target:  5'- aGGGG-CGGGCGGucaugucGGgGGggUCCg-- -3'
miRNA:   3'- aCCCCgGCCCGCC-------CCgCCuuAGGacc -5'
5609 5' -65 NC_001806.1 + 9335 0.66 0.499541
Target:  5'- gUGGGGCCucGGGaUGGGGCgccuuaccagaagacGGAcgaaucggaggCCUGGg -3'
miRNA:   3'- -ACCCCGG--CCC-GCCCCG---------------CCUua---------GGACC- -5'
5609 5' -65 NC_001806.1 + 10391 0.75 0.140991
Target:  5'- gGGGGgCGGGgGGaGGCGGGAgCCgGGg -3'
miRNA:   3'- aCCCCgGCCCgCC-CCGCCUUaGGaCC- -5'
5609 5' -65 NC_001806.1 + 10490 0.74 0.178977
Target:  5'- cUGGGGUCggGGGUGGGGuCGGAa--CUGGg -3'
miRNA:   3'- -ACCCCGG--CCCGCCCC-GCCUuagGACC- -5'
5609 5' -65 NC_001806.1 + 10697 0.74 0.183239
Target:  5'- aUGGGGCCGGG-GGGGCGuAcgCCa-- -3'
miRNA:   3'- -ACCCCGGCCCgCCCCGCcUuaGGacc -5'
5609 5' -65 NC_001806.1 + 11816 0.71 0.270348
Target:  5'- gGGGGUgGaGGUgguggucgagGGGGUGGAggCCUGGu -3'
miRNA:   3'- aCCCCGgC-CCG----------CCCCGCCUuaGGACC- -5'
5609 5' -65 NC_001806.1 + 12823 0.69 0.37242
Target:  5'- gGGuGGCCGGGgGauGGuaaggcgucGCGGcGUCCUGGa -3'
miRNA:   3'- aCC-CCGGCCCgC--CC---------CGCCuUAGGACC- -5'
5609 5' -65 NC_001806.1 + 12937 0.66 0.5159
Target:  5'- cGGGGUCuucCGGGGCG-AGUUCUGGc -3'
miRNA:   3'- aCCCCGGcccGCCCCGCcUUAGGACC- -5'
5609 5' -65 NC_001806.1 + 14056 0.67 0.453669
Target:  5'- gGGGGCCGGG-GccaCGGAuuUCCUGGu -3'
miRNA:   3'- aCCCCGGCCCgCcccGCCUu-AGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.