Results 21 - 40 of 125 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5609 | 5' | -65 | NC_001806.1 | + | 148087 | 0.66 | 0.543623 |
Target: 5'- aUGGGcGCCGaGG-GGGGCGcuGUCCg-- -3' miRNA: 3'- -ACCC-CGGC-CCgCCCCGCcuUAGGacc -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 16866 | 0.66 | 0.543623 |
Target: 5'- gGGGGUCuccggGGGCGGGGaguccaGGcacgcGUCCUcGGc -3' miRNA: 3'- aCCCCGG-----CCCGCCCCg-----CCu----UAGGA-CC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 3544 | 0.66 | 0.525081 |
Target: 5'- gGGGGaggCGGGCGcGGCGGAcagCCgccccaGGg -3' miRNA: 3'- aCCCCg--GCCCGCcCCGCCUua-GGa-----CC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 27019 | 0.66 | 0.526003 |
Target: 5'- cGGcGCCGGGUGGcggaggccgaGGCGGucaucgggccgugCCUGGg -3' miRNA: 3'- aCCcCGGCCCGCC----------CCGCCuua----------GGACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 55075 | 0.66 | 0.534324 |
Target: 5'- gUGGGGCUGGagggucagagacGgGGGGCGGAacAUgC-GGa -3' miRNA: 3'- -ACCCCGGCC------------CgCCCCGCCU--UAgGaCC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 149022 | 0.66 | 0.538037 |
Target: 5'- cGGGG-CGGGCuaaggggaaaaaaggGGGGCGGGuaagaaUGGg -3' miRNA: 3'- aCCCCgGCCCG---------------CCCCGCCUuagg--ACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 19363 | 0.66 | 0.5159 |
Target: 5'- gGGGGCCcuacGGccaccgauGCGGGG-GGcuucAUCCUGGu -3' miRNA: 3'- aCCCCGG----CC--------CGCCCCgCCu---UAGGACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 89779 | 0.67 | 0.453669 |
Target: 5'- cGGGGCgugggagGGGCuGGGGCGGA--CC-GGc -3' miRNA: 3'- aCCCCGg------CCCG-CCCCGCCUuaGGaCC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 55541 | 0.67 | 0.453669 |
Target: 5'- gUGGGGCgGcccgacuuGGCgGGGGUGGuguuguUCUUGGg -3' miRNA: 3'- -ACCCCGgC--------CCG-CCCCGCCuu----AGGACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 42005 | 0.67 | 0.471051 |
Target: 5'- aGGGcugcuccguGCUGGccGCGGGGuUGGggUCgUGGg -3' miRNA: 3'- aCCC---------CGGCC--CGCCCC-GCCuuAGgACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 147487 | 0.67 | 0.488764 |
Target: 5'- gGGGaGCgGGGCggcgccggagGGGGCGGcg-CCgcgGGa -3' miRNA: 3'- aCCC-CGgCCCG----------CCCCGCCuuaGGa--CC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 109537 | 0.67 | 0.462317 |
Target: 5'- cGGGaGCCGGG-GGaGGUGcg--CCUGGg -3' miRNA: 3'- aCCC-CGGCCCgCC-CCGCcuuaGGACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 29695 | 0.67 | 0.453669 |
Target: 5'- gGcGGGCCGGGgagGGGGCGuAA-CCUGa -3' miRNA: 3'- aC-CCCGGCCCg--CCCCGCcUUaGGACc -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 55583 | 0.67 | 0.487871 |
Target: 5'- uUGGGGUCGGGgGuggacguGGGgGGGcUUUUGGg -3' miRNA: 3'- -ACCCCGGCCCgC-------CCCgCCUuAGGACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 22437 | 0.67 | 0.488764 |
Target: 5'- cUGGGGCCuGGCGcacgcGGCGGccgCCgUGGc -3' miRNA: 3'- -ACCCCGGcCCGCc----CCGCCuuaGG-ACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 46811 | 0.67 | 0.479867 |
Target: 5'- cGGGGaCCGGGacugGGuGGCGGGGgg-UGGg -3' miRNA: 3'- aCCCC-GGCCCg---CC-CCGCCUUaggACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 4821 | 0.67 | 0.462317 |
Target: 5'- gGGGGuCCGGggcggcgaggccGCGGGGuCGGGcgUCgGGa -3' miRNA: 3'- aCCCC-GGCC------------CGCCCC-GCCUuaGGaCC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 14056 | 0.67 | 0.453669 |
Target: 5'- gGGGGCCGGG-GccaCGGAuuUCCUGGu -3' miRNA: 3'- aCCCCGGCCCgCcccGCCUu-AGGACC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 45511 | 0.67 | 0.488764 |
Target: 5'- gUGGGGUgagGGGUGGGGgUGGAggguGUCCcaGGa -3' miRNA: 3'- -ACCCCGg--CCCGCCCC-GCCU----UAGGa-CC- -5' |
|||||||
5609 | 5' | -65 | NC_001806.1 | + | 5662 | 0.68 | 0.395743 |
Target: 5'- -uGGGCgGGGCGcgaGGGCGGGuggGUCCg-- -3' miRNA: 3'- acCCCGgCCCGC---CCCGCCU---UAGGacc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home