miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 5' -65 NC_001806.1 + 86038 0.74 0.170716
Target:  5'- -aGGGCCgcGGGgGGGGCGGGcucGUCCccUGGg -3'
miRNA:   3'- acCCCGG--CCCgCCCCGCCU---UAGG--ACC- -5'
5609 5' -65 NC_001806.1 + 56679 0.74 0.170716
Target:  5'- gGGGGUCGGG-GGGGaCGGGggCCcGGg -3'
miRNA:   3'- aCCCCGGCCCgCCCC-GCCUuaGGaCC- -5'
5609 5' -65 NC_001806.1 + 92901 0.74 0.16553
Target:  5'- cUGcGGCCgcgugguccgcgcaGGGCGGGGCGGg--CCUGGa -3'
miRNA:   3'- -ACcCCGG--------------CCCGCCCCGCCuuaGGACC- -5'
5609 5' -65 NC_001806.1 + 31378 0.74 0.162797
Target:  5'- gGGGGUCGGGCGcuGGGUGGuc-UCUGGc -3'
miRNA:   3'- aCCCCGGCCCGC--CCCGCCuuaGGACC- -5'
5609 5' -65 NC_001806.1 + 79267 0.73 0.210736
Target:  5'- uUGGGGCggaGGGCucguuGGGGCccGGAAgCCUGGc -3'
miRNA:   3'- -ACCCCGg--CCCG-----CCCCG--CCUUaGGACC- -5'
5609 5' -65 NC_001806.1 + 2804 0.73 0.205918
Target:  5'- cGcGGGCUGGGCgGGGGCGGGcucgggCCccgGGg -3'
miRNA:   3'- aC-CCCGGCCCG-CCCCGCCUua----GGa--CC- -5'
5609 5' -65 NC_001806.1 + 83278 0.73 0.205918
Target:  5'- gGGGGuUCGGGCGGGcGCGGAGgaccCCg-- -3'
miRNA:   3'- aCCCC-GGCCCGCCC-CGCCUUa---GGacc -5'
5609 5' -65 NC_001806.1 + 84256 0.73 0.196568
Target:  5'- gGGGGCgCGGGCGcaccGGCGGAGaaugCCUGc -3'
miRNA:   3'- aCCCCG-GCCCGCc---CCGCCUUa---GGACc -5'
5609 5' -65 NC_001806.1 + 143135 0.73 0.196568
Target:  5'- aGGGGCCGcGGauGGGCGGGccuaCUUGGu -3'
miRNA:   3'- aCCCCGGC-CCgcCCCGCCUua--GGACC- -5'
5609 5' -65 NC_001806.1 + 62245 0.73 0.196568
Target:  5'- gGGGGagaGGGCuGGGGCcgcGGAAUCCaUGGc -3'
miRNA:   3'- aCCCCgg-CCCG-CCCCG---CCUUAGG-ACC- -5'
5609 5' -65 NC_001806.1 + 22062 0.72 0.249466
Target:  5'- cGGcGCCGGGCccccgcccccGGGGCGGGugcuguacggcggCCUGGg -3'
miRNA:   3'- aCCcCGGCCCG----------CCCCGCCUua-----------GGACC- -5'
5609 5' -65 NC_001806.1 + 20667 0.72 0.24723
Target:  5'- cGGcGuGCCGGcGuCGGGGCGGggUCgUGc -3'
miRNA:   3'- aCC-C-CGGCC-C-GCCCCGCCuuAGgACc -5'
5609 5' -65 NC_001806.1 + 30419 0.72 0.24723
Target:  5'- gGGGGCCGGGCGuggaGGGUGGGca-CgGGc -3'
miRNA:   3'- aCCCCGGCCCGC----CCCGCCUuagGaCC- -5'
5609 5' -65 NC_001806.1 + 28184 0.72 0.241713
Target:  5'- aGGGGCCGGGCgccaugucuGGGGCGccauaUUGGg -3'
miRNA:   3'- aCCCCGGCCCG---------CCCCGCcuuagGACC- -5'
5609 5' -65 NC_001806.1 + 111546 0.72 0.230985
Target:  5'- gGGuGGCCGGGCguuGGGGUGGAucuuagCCUccccGGg -3'
miRNA:   3'- aCC-CCGGCCCG---CCCCGCCUua----GGA----CC- -5'
5609 5' -65 NC_001806.1 + 34427 0.72 0.220663
Target:  5'- -cGGGCCGGGCcggguGGGCGGggU-UUGGa -3'
miRNA:   3'- acCCCGGCCCGc----CCCGCCuuAgGACC- -5'
5609 5' -65 NC_001806.1 + 11816 0.71 0.270348
Target:  5'- gGGGGUgGaGGUgguggucgagGGGGUGGAggCCUGGu -3'
miRNA:   3'- aCCCCGgC-CCG----------CCCCGCCUuaGGACC- -5'
5609 5' -65 NC_001806.1 + 93706 0.71 0.270348
Target:  5'- aGGGGuuGGGgGGuGGgGGAA-CCUaGGg -3'
miRNA:   3'- aCCCCggCCCgCC-CCgCCUUaGGA-CC- -5'
5609 5' -65 NC_001806.1 + 20717 0.71 0.270348
Target:  5'- gUGGGcccGCCGGG-GGGGCGGGGggCCggcGGc -3'
miRNA:   3'- -ACCC---CGGCCCgCCCCGCCUUa-GGa--CC- -5'
5609 5' -65 NC_001806.1 + 33629 0.71 0.270348
Target:  5'- gGGGGCCggauacccacacGGGCGGGGgGGGGgugUCgcgGGc -3'
miRNA:   3'- aCCCCGG------------CCCGCCCCgCCUUa--GGa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.