Results 21 - 40 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5609 | 5' | -65 | NC_001806.1 | + | 10490 | 0.74 | 0.178977 |
Target: 5'- cUGGGGUCggGGGUGGGGuCGGAa--CUGGg -3' miRNA: 3'- -ACCCCGG--CCCGCCCC-GCCUuagGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 10697 | 0.74 | 0.183239 |
Target: 5'- aUGGGGCCGGG-GGGGCGuAcgCCa-- -3' miRNA: 3'- -ACCCCGGCCCgCCCCGCcUuaGGacc -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 32953 | 0.74 | 0.187591 |
Target: 5'- gUGGGGCCccGGGcCGGGGCcccuuGggUCCgccgGGg -3' miRNA: 3'- -ACCCCGG--CCC-GCCCCGc----CuuAGGa---CC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 151568 | 0.74 | 0.187591 |
Target: 5'- gGGGGCCGcgauGGCGGcGGCGGcgggCCaUGGa -3' miRNA: 3'- aCCCCGGC----CCGCC-CCGCCuua-GG-ACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 84256 | 0.73 | 0.196568 |
Target: 5'- gGGGGCgCGGGCGcaccGGCGGAGaaugCCUGc -3' miRNA: 3'- aCCCCG-GCCCGCc---CCGCCUUa---GGACc -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 143135 | 0.73 | 0.196568 |
Target: 5'- aGGGGCCGcGGauGGGCGGGccuaCUUGGu -3' miRNA: 3'- aCCCCGGC-CCgcCCCGCCUua--GGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 62245 | 0.73 | 0.196568 |
Target: 5'- gGGGGagaGGGCuGGGGCcgcGGAAUCCaUGGc -3' miRNA: 3'- aCCCCgg-CCCG-CCCCG---CCUUAGG-ACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 83278 | 0.73 | 0.205918 |
Target: 5'- gGGGGuUCGGGCGGGcGCGGAGgaccCCg-- -3' miRNA: 3'- aCCCC-GGCCCGCCC-CGCCUUa---GGacc -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 2804 | 0.73 | 0.205918 |
Target: 5'- cGcGGGCUGGGCgGGGGCGGGcucgggCCccgGGg -3' miRNA: 3'- aC-CCCGGCCCG-CCCCGCCUua----GGa--CC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 79267 | 0.73 | 0.210736 |
Target: 5'- uUGGGGCggaGGGCucguuGGGGCccGGAAgCCUGGc -3' miRNA: 3'- -ACCCCGg--CCCG-----CCCCG--CCUUaGGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 34427 | 0.72 | 0.220663 |
Target: 5'- -cGGGCCGGGCcggguGGGCGGggU-UUGGa -3' miRNA: 3'- acCCCGGCCCGc----CCCGCCuuAgGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 111546 | 0.72 | 0.230985 |
Target: 5'- gGGuGGCCGGGCguuGGGGUGGAucuuagCCUccccGGg -3' miRNA: 3'- aCC-CCGGCCCG---CCCCGCCUua----GGA----CC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 28184 | 0.72 | 0.241713 |
Target: 5'- aGGGGCCGGGCgccaugucuGGGGCGccauaUUGGg -3' miRNA: 3'- aCCCCGGCCCG---------CCCCGCcuuagGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 30419 | 0.72 | 0.24723 |
Target: 5'- gGGGGCCGGGCGuggaGGGUGGGca-CgGGc -3' miRNA: 3'- aCCCCGGCCCGC----CCCGCCUuagGaCC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 20667 | 0.72 | 0.24723 |
Target: 5'- cGGcGuGCCGGcGuCGGGGCGGggUCgUGc -3' miRNA: 3'- aCC-C-CGGCC-C-GCCCCGCCuuAGgACc -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 22062 | 0.72 | 0.249466 |
Target: 5'- cGGcGCCGGGCccccgcccccGGGGCGGGugcuguacggcggCCUGGg -3' miRNA: 3'- aCCcCGGCCCG----------CCCCGCCUua-----------GGACC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 147826 | 0.71 | 0.258 |
Target: 5'- gGGGGCCuguGGGgagaggcCGGGGgGGAGUCgCUGa -3' miRNA: 3'- aCCCCGG---CCC-------GCCCCgCCUUAG-GACc -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 93706 | 0.71 | 0.270348 |
Target: 5'- aGGGGuuGGGgGGuGGgGGAA-CCUaGGg -3' miRNA: 3'- aCCCCggCCCgCC-CCgCCUUaGGA-CC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 20717 | 0.71 | 0.270348 |
Target: 5'- gUGGGcccGCCGGG-GGGGCGGGGggCCggcGGc -3' miRNA: 3'- -ACCC---CGGCCCgCCCCGCCUUa-GGa--CC- -5' |
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5609 | 5' | -65 | NC_001806.1 | + | 33629 | 0.71 | 0.270348 |
Target: 5'- gGGGGCCggauacccacacGGGCGGGGgGGGGgugUCgcgGGc -3' miRNA: 3'- aCCCCGG------------CCCGCCCCgCCUUa--GGa--CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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