miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5609 5' -65 NC_001806.1 + 15857 0.68 0.436641
Target:  5'- uUGGGGCCGcGG-GGGGCcgagaacaaGGAcgcGUUgUGGa -3'
miRNA:   3'- -ACCCCGGC-CCgCCCCG---------CCU---UAGgACC- -5'
5609 5' -65 NC_001806.1 + 43501 0.68 0.4358
Target:  5'- cGGGGCCGuGGCGGcccaucaggacaaGauGCGGcg-CCUGGc -3'
miRNA:   3'- aCCCCGGC-CCGCC-------------C--CGCCuuaGGACC- -5'
5609 5' -65 NC_001806.1 + 113403 0.68 0.428267
Target:  5'- cGGGGCCuGGaGCugGGGGUGGGAcgCCa-- -3'
miRNA:   3'- aCCCCGG-CC-CG--CCCCGCCUUa-GGacc -5'
5609 5' -65 NC_001806.1 + 27331 0.68 0.428267
Target:  5'- cGGGGCCcGGCccauuGGGCGGGAguuaccgCCcaaUGGg -3'
miRNA:   3'- aCCCCGGcCCGc----CCCGCCUUa------GG---ACC- -5'
5609 5' -65 NC_001806.1 + 21757 0.68 0.428267
Target:  5'- cGaGGCgCGGGCcgucGGGCGGggUCCg-- -3'
miRNA:   3'- aCcCCG-GCCCGc---CCCGCCuuAGGacc -5'
5609 5' -65 NC_001806.1 + 14379 0.68 0.428267
Target:  5'- gGGGGCUGGGgugaggggacacUGGGGCgugcguuaaGGggUCCg-- -3'
miRNA:   3'- aCCCCGGCCC------------GCCCCG---------CCuuAGGacc -5'
5609 5' -65 NC_001806.1 + 99612 0.68 0.419165
Target:  5'- aGGGGCgcgcgucUGGGUggaaggacaugGGGGCGGuggcgggCCUGGc -3'
miRNA:   3'- aCCCCG-------GCCCG-----------CCCCGCCuua----GGACC- -5'
5609 5' -65 NC_001806.1 + 30014 0.68 0.411806
Target:  5'- uUGGGGuuGuugaagcggaGGCGGGGCGG---CCgagGGg -3'
miRNA:   3'- -ACCCCggC----------CCGCCCCGCCuuaGGa--CC- -5'
5609 5' -65 NC_001806.1 + 145647 0.68 0.411806
Target:  5'- cGGGuGCCGGGggacCGGGGUG--AUCuCUGGc -3'
miRNA:   3'- aCCC-CGGCCC----GCCCCGCcuUAG-GACC- -5'
5609 5' -65 NC_001806.1 + 5662 0.68 0.395743
Target:  5'- -uGGGCgGGGCGcgaGGGCGGGuggGUCCg-- -3'
miRNA:   3'- acCCCGgCCCGC---CCCGCCU---UAGGacc -5'
5609 5' -65 NC_001806.1 + 121405 0.68 0.394951
Target:  5'- cGGaGCCGGGCGcgugcugcgccuuGGGCccGGGggCCUGGu -3'
miRNA:   3'- aCCcCGGCCCGC-------------CCCG--CCUuaGGACC- -5'
5609 5' -65 NC_001806.1 + 9232 0.68 0.394951
Target:  5'- aGGGG-CGGGCGGucaugucGGgGGggUCCg-- -3'
miRNA:   3'- aCCCCgGCCCGCC-------CCgCCuuAGGacc -5'
5609 5' -65 NC_001806.1 + 31957 0.68 0.387864
Target:  5'- aGGGGU--GGCGGGGCGGGAcg--GGg -3'
miRNA:   3'- aCCCCGgcCCGCCCCGCCUUaggaCC- -5'
5609 5' -65 NC_001806.1 + 30636 0.69 0.38009
Target:  5'- -aGGGCCGGGgGGGcGCGG---CCaGGg -3'
miRNA:   3'- acCCCGGCCCgCCC-CGCCuuaGGaCC- -5'
5609 5' -65 NC_001806.1 + 4666 0.69 0.38009
Target:  5'- -uGGGCCGG-CGGGcGCGGcgacaggcGGUCCgUGGg -3'
miRNA:   3'- acCCCGGCCcGCCC-CGCC--------UUAGG-ACC- -5'
5609 5' -65 NC_001806.1 + 12823 0.69 0.37242
Target:  5'- gGGuGGCCGGGgGauGGuaaggcgucGCGGcGUCCUGGa -3'
miRNA:   3'- aCC-CCGGCCCgC--CC---------CGCCuUAGGACC- -5'
5609 5' -65 NC_001806.1 + 25621 0.69 0.37242
Target:  5'- -nGGGCCGGGgagggcUGGGGCuggGGAGggCUGGg -3'
miRNA:   3'- acCCCGGCCC------GCCCCG---CCUUagGACC- -5'
5609 5' -65 NC_001806.1 + 32011 0.69 0.364856
Target:  5'- gUGGGuGUUgggGGGUGGGGCGGAGgggUGGg -3'
miRNA:   3'- -ACCC-CGG---CCCGCCCCGCCUUaggACC- -5'
5609 5' -65 NC_001806.1 + 25352 0.69 0.364856
Target:  5'- aGGGGCgggaggGGGCgaGGGGCGGGAgggggCgaGGg -3'
miRNA:   3'- aCCCCGg-----CCCG--CCCCGCCUUa----GgaCC- -5'
5609 5' -65 NC_001806.1 + 25199 0.69 0.364856
Target:  5'- aGGGGCgggaggGGGCgaGGGGCGGGAgggggCgaGGg -3'
miRNA:   3'- aCCCCGg-----CCCG--CCCCGCCUUa----GgaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.