Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5610 | 5' | -56.1 | NC_001806.1 | + | 108580 | 1.09 | 0.003324 |
Target: 5'- aCGCGGAAAGACGGUCCACGUCACCCAc -3' miRNA: 3'- -GCGCCUUUCUGCCAGGUGCAGUGGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 133708 | 0.8 | 0.23797 |
Target: 5'- gGCGGGGAGuCGGUCgGCGUC-CCCGc -3' miRNA: 3'- gCGCCUUUCuGCCAGgUGCAGuGGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 102132 | 0.75 | 0.435174 |
Target: 5'- gGCGGuuguuGAGGCGGUCCGCGUacacgUugCCGu -3' miRNA: 3'- gCGCCu----UUCUGCCAGGUGCA-----GugGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 144288 | 0.75 | 0.453135 |
Target: 5'- cCGCGGGccagcAGACGGcCCGCGaCACCCc -3' miRNA: 3'- -GCGCCUu----UCUGCCaGGUGCaGUGGGu -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 94810 | 0.75 | 0.462265 |
Target: 5'- aCGCGGggGgcGACGGgcagccCCAccCGUCGCCCGa -3' miRNA: 3'- -GCGCCuuU--CUGCCa-----GGU--GCAGUGGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 50379 | 0.74 | 0.499707 |
Target: 5'- gGCGGAGcAGACGGUCCA-GUgGCUCu -3' miRNA: 3'- gCGCCUU-UCUGCCAGGUgCAgUGGGu -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 5664 | 0.73 | 0.548283 |
Target: 5'- gGCGGGgcgcgagggcGGGugGGUCCGCGcccCGCCCc -3' miRNA: 3'- gCGCCU----------UUCugCCAGGUGCa--GUGGGu -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 49500 | 0.73 | 0.548283 |
Target: 5'- gGCGGGucGGCGGUUCGCGgguggCGCCg- -3' miRNA: 3'- gCGCCUuuCUGCCAGGUGCa----GUGGgu -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 81342 | 0.73 | 0.588173 |
Target: 5'- aCGCGGGccgcaaccAGGCGG-CCgggGCGUCGCCCGc -3' miRNA: 3'- -GCGCCUu-------UCUGCCaGG---UGCAGUGGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 68589 | 0.72 | 0.628556 |
Target: 5'- gGCGGcccuGGGGcCGGUCCGCGUC-CgCCAg -3' miRNA: 3'- gCGCCu---UUCU-GCCAGGUGCAGuG-GGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 95132 | 0.72 | 0.622485 |
Target: 5'- gGUGGAcgcccuaauaaucGGCGGUcaggCCACGUCACCCGa -3' miRNA: 3'- gCGCCUuu-----------CUGCCA----GGUGCAGUGGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 85174 | 0.72 | 0.60732 |
Target: 5'- aCGCGGGAgacGGGCGGUucgccgccaccagCCGCGagGCCCu -3' miRNA: 3'- -GCGCCUU---UCUGCCA-------------GGUGCagUGGGu -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 55015 | 0.71 | 0.679032 |
Target: 5'- aCGCGGGuaguAGGCGGcggccgUgCACGUCGCCUu -3' miRNA: 3'- -GCGCCUu---UCUGCC------AgGUGCAGUGGGu -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 56846 | 0.71 | 0.699016 |
Target: 5'- cCGCGGccAGGGCGG-CCGCGgcggGCCCAc -3' miRNA: 3'- -GCGCCu-UUCUGCCaGGUGCag--UGGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 74766 | 0.71 | 0.699016 |
Target: 5'- aGCGGGcgAAGGUGGcCCGCGaCGCCCGg -3' miRNA: 3'- gCGCCU--UUCUGCCaGGUGCaGUGGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 132483 | 0.7 | 0.738254 |
Target: 5'- aGUGGcauaccACGGUCCACGcCGCCCc -3' miRNA: 3'- gCGCCuuuc--UGCCAGGUGCaGUGGGu -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 2989 | 0.7 | 0.728558 |
Target: 5'- gCGCGGGGAGGCGG-CgGCGgcCGCCa- -3' miRNA: 3'- -GCGCCUUUCUGCCaGgUGCa-GUGGgu -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 149928 | 0.7 | 0.71878 |
Target: 5'- uGCGGAGaggGGGCGGcCCGaGUCugCCu -3' miRNA: 3'- gCGCCUU---UCUGCCaGGUgCAGugGGu -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 134243 | 0.7 | 0.71878 |
Target: 5'- aGCGGggGGGCGGcCC-CGgCAgCCGg -3' miRNA: 3'- gCGCCuuUCUGCCaGGuGCaGUgGGU- -5' |
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5610 | 5' | -56.1 | NC_001806.1 | + | 94662 | 0.7 | 0.738254 |
Target: 5'- gGCGGAccGuauCuGUaaCCACGUCACCCAg -3' miRNA: 3'- gCGCCUuuCu--GcCA--GGUGCAGUGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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