miRNA display CGI


Results 61 - 80 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5611 3' -55.1 NC_001806.1 + 51767 0.71 0.711543
Target:  5'- uGGcGCGCACCCcguucaagagcGGGGCCGugGCGGCCa -3'
miRNA:   3'- -CCaCGCGUGGG-----------UUUUGGUcgCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 3813 0.71 0.711543
Target:  5'- cGUGCGCcagGCCCc-AGCCGaaGCGGCCg -3'
miRNA:   3'- cCACGCG---UGGGuuUUGGUcgCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 76801 0.71 0.711543
Target:  5'- --aGaCGCACCC---GCUaAGCGCGGCCa -3'
miRNA:   3'- ccaC-GCGUGGGuuuUGG-UCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 24202 0.71 0.72148
Target:  5'- cGUGCGCGCCUgcGACUGGCcCG-CCg -3'
miRNA:   3'- cCACGCGUGGGuuUUGGUCGcGCuGG- -5'
5611 3' -55.1 NC_001806.1 + 1916 0.71 0.731339
Target:  5'- --cGCG-GCCCGAGGCCAGCaccguGCGGCg -3'
miRNA:   3'- ccaCGCgUGGGUUUUGGUCG-----CGCUGg -5'
5611 3' -55.1 NC_001806.1 + 3616 0.71 0.731339
Target:  5'- --cGCGCGCUCGc--CCGGUGCGGCg -3'
miRNA:   3'- ccaCGCGUGGGUuuuGGUCGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 141975 0.71 0.731339
Target:  5'- cGGgggGCGCGgaCGAGgaaaacgucacACCAGCGgGACCa -3'
miRNA:   3'- -CCa--CGCGUggGUUU-----------UGGUCGCgCUGG- -5'
5611 3' -55.1 NC_001806.1 + 85743 0.71 0.741113
Target:  5'- -cUGCGguCC-GGAGCC-GCGCGGCCa -3'
miRNA:   3'- ccACGCguGGgUUUUGGuCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 73982 0.71 0.741113
Target:  5'- -aUGCcCGCCCc-GGCCGGgGCGGCCc -3'
miRNA:   3'- ccACGcGUGGGuuUUGGUCgCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 44370 0.71 0.741113
Target:  5'- ---aCGUGCCCGggGAGCCAGCGCGuaggaacgACCa -3'
miRNA:   3'- ccacGCGUGGGU--UUUGGUCGCGC--------UGG- -5'
5611 3' -55.1 NC_001806.1 + 26495 0.71 0.741113
Target:  5'- aGGaGCGCGCCCGcgGCCGcccCGCcGCCg -3'
miRNA:   3'- -CCaCGCGUGGGUuuUGGUc--GCGcUGG- -5'
5611 3' -55.1 NC_001806.1 + 140114 0.71 0.741113
Target:  5'- gGGU-CGCcCCCAGAggagacGCCAgGCGCGGCa -3'
miRNA:   3'- -CCAcGCGuGGGUUU------UGGU-CGCGCUGg -5'
5611 3' -55.1 NC_001806.1 + 130415 0.7 0.750792
Target:  5'- cGGgGCGUACauuucgacgcccUCAGGGcCCAGCGCGAUCu -3'
miRNA:   3'- -CCaCGCGUG------------GGUUUU-GGUCGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 136107 0.7 0.750792
Target:  5'- -uUGCGCAgCCGgcAGACguGCGCGugUu -3'
miRNA:   3'- ccACGCGUgGGU--UUUGguCGCGCugG- -5'
5611 3' -55.1 NC_001806.1 + 100931 0.7 0.760366
Target:  5'- gGGUGCGCcucgcccCCCAGgcguuuuguGGCCAGgGaGACCg -3'
miRNA:   3'- -CCACGCGu------GGGUU---------UUGGUCgCgCUGG- -5'
5611 3' -55.1 NC_001806.1 + 77359 0.7 0.760366
Target:  5'- --cGCGUACgCCAAGGCCacaggccagacgGGCGCGGgCg -3'
miRNA:   3'- ccaCGCGUG-GGUUUUGG------------UCGCGCUgG- -5'
5611 3' -55.1 NC_001806.1 + 69117 0.7 0.760366
Target:  5'- uGUGCGCcCCCGGGgacGCUAauggcGCGCGugCg -3'
miRNA:   3'- cCACGCGuGGGUUU---UGGU-----CGCGCugG- -5'
5611 3' -55.1 NC_001806.1 + 151033 0.7 0.760366
Target:  5'- aGGUgGCGCACCCGGAcgugggGCgagaAGCGC-ACCc -3'
miRNA:   3'- -CCA-CGCGUGGGUUU------UGg---UCGCGcUGG- -5'
5611 3' -55.1 NC_001806.1 + 129078 0.7 0.760366
Target:  5'- --aGCGC-CCCGAcGGCCAgguGCGUGACUg -3'
miRNA:   3'- ccaCGCGuGGGUU-UUGGU---CGCGCUGG- -5'
5611 3' -55.1 NC_001806.1 + 113833 0.7 0.769827
Target:  5'- -cUGUGaCGCCCuGAugCGGCGCGcgGCCc -3'
miRNA:   3'- ccACGC-GUGGGuUUugGUCGCGC--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.