miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5617 3' -60.5 NC_001806.1 + 21772 0.66 0.709008
Target:  5'- cGGGCGggguccgucgaGCGCGGcGCCgGCaGCCCCcgGg -3'
miRNA:   3'- -CUCGU-----------UGCGCC-CGGgUGcUGGGGuaU- -5'
5617 3' -60.5 NC_001806.1 + 22641 0.66 0.688287
Target:  5'- cGAGC-GCGCGGuGCCCgccggguACGGCgCCGc- -3'
miRNA:   3'- -CUCGuUGCGCC-CGGG-------UGCUGgGGUau -5'
5617 3' -60.5 NC_001806.1 + 70860 0.66 0.689279
Target:  5'- -cGCGGcCGCGGGaCC-CGAgCCCGUGg -3'
miRNA:   3'- cuCGUU-GCGCCCgGGuGCUgGGGUAU- -5'
5617 3' -60.5 NC_001806.1 + 147026 0.66 0.709008
Target:  5'- aGGUAGCGCGugaggccGCCCGCGgggacgGCCCCGg- -3'
miRNA:   3'- cUCGUUGCGCc------CGGGUGC------UGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 59609 0.66 0.699171
Target:  5'- uGGUcaAGCGCcgGGGCCUugGgGCCCCGg- -3'
miRNA:   3'- cUCG--UUGCG--CCCGGGugC-UGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 114166 0.66 0.709008
Target:  5'- cGGCGAgGaGuGCCCcaGCGACCCCGUGa -3'
miRNA:   3'- cUCGUUgCgCcCGGG--UGCUGGGGUAU- -5'
5617 3' -60.5 NC_001806.1 + 22557 0.66 0.679342
Target:  5'- -cGCGGCGCugacgGGGgCCGCGgggaGCCCCGg- -3'
miRNA:   3'- cuCGUUGCG-----CCCgGGUGC----UGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 72138 0.66 0.689279
Target:  5'- cGGCc-CGUGGGCCCuGCGcCCCCu-- -3'
miRNA:   3'- cUCGuuGCGCCCGGG-UGCuGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 87655 0.66 0.699171
Target:  5'- -cGCGuuGCGCGGGCCCgGCGGCgUaGUAg -3'
miRNA:   3'- cuCGU--UGCGCCCGGG-UGCUGgGgUAU- -5'
5617 3' -60.5 NC_001806.1 + 2765 0.66 0.689279
Target:  5'- gGGGCGcGgGCGGGCCUgcgccgcgGCGGCCCgGg- -3'
miRNA:   3'- -CUCGU-UgCGCCCGGG--------UGCUGGGgUau -5'
5617 3' -60.5 NC_001806.1 + 22380 0.66 0.659363
Target:  5'- cAGCGugGCGCGGGCCgu--GCCCCAc- -3'
miRNA:   3'- cUCGU--UGCGCCCGGgugcUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 77155 0.66 0.659363
Target:  5'- cGGGgGGCGCGuGGCCCAacacgcCGACCUgAg- -3'
miRNA:   3'- -CUCgUUGCGC-CCGGGU------GCUGGGgUau -5'
5617 3' -60.5 NC_001806.1 + 7547 0.66 0.659363
Target:  5'- gGAGCAuACGCucGGGCCCGCGucgggaUCCAc- -3'
miRNA:   3'- -CUCGU-UGCG--CCCGGGUGCug----GGGUau -5'
5617 3' -60.5 NC_001806.1 + 31090 0.66 0.659363
Target:  5'- uGGCGACccggcuGCGGG-CCGCGGuCCCCGg- -3'
miRNA:   3'- cUCGUUG------CGCCCgGGUGCU-GGGGUau -5'
5617 3' -60.5 NC_001806.1 + 23721 0.66 0.679342
Target:  5'- -cGguGCGcCGGGCCCGC--CCCCGc- -3'
miRNA:   3'- cuCguUGC-GCCCGGGUGcuGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 36839 0.66 0.669367
Target:  5'- aGGCcguACGcCGGGCCCAC--CCCCGc- -3'
miRNA:   3'- cUCGu--UGC-GCCCGGGUGcuGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 143427 0.67 0.599168
Target:  5'- cGAGCGGC-CcGGCCCGCGcUCCCAc- -3'
miRNA:   3'- -CUCGUUGcGcCCGGGUGCuGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 23573 0.67 0.609183
Target:  5'- cAGCcACacgGCGGcGCCCGCGGCCgCCGc- -3'
miRNA:   3'- cUCGuUG---CGCC-CGGGUGCUGG-GGUau -5'
5617 3' -60.5 NC_001806.1 + 26417 0.67 0.609183
Target:  5'- cGGCcGCcCGGGCCCACGGgcgccgUCCCAa- -3'
miRNA:   3'- cUCGuUGcGCCCGGGUGCU------GGGGUau -5'
5617 3' -60.5 NC_001806.1 + 151009 0.67 0.6393
Target:  5'- cGGGCGGC-CGaGGCCCA-GACCaCCAg- -3'
miRNA:   3'- -CUCGUUGcGC-CCGGGUgCUGG-GGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.