miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5617 3' -60.5 NC_001806.1 + 89527 0.71 0.377964
Target:  5'- cGAGCugcuGCGCGGcGCCCcggccgGCGGCCCgGUu -3'
miRNA:   3'- -CUCGu---UGCGCC-CGGG------UGCUGGGgUAu -5'
5617 3' -60.5 NC_001806.1 + 4335 0.71 0.385268
Target:  5'- -cGCcGCGCGGGCCCggcggcgcucgauGCGGCCCgCGg- -3'
miRNA:   3'- cuCGuUGCGCCCGGG-------------UGCUGGG-GUau -5'
5617 3' -60.5 NC_001806.1 + 41800 0.71 0.39432
Target:  5'- ---gGugGCGGaGUCCACGGCCCCGc- -3'
miRNA:   3'- cucgUugCGCC-CGGGUGCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 5675 0.71 0.402667
Target:  5'- aGGGCGG-GUGGGUCCGCG-CCCCGc- -3'
miRNA:   3'- -CUCGUUgCGCCCGGGUGCuGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 12163 0.71 0.402667
Target:  5'- gGGGCGACGUGGGCaCGCGGUCaCCGUGa -3'
miRNA:   3'- -CUCGUUGCGCCCGgGUGCUGG-GGUAU- -5'
5617 3' -60.5 NC_001806.1 + 106745 0.71 0.411126
Target:  5'- aGGGUcccuGACGCGGGCCgacaACGGCUCCGc- -3'
miRNA:   3'- -CUCG----UUGCGCCCGGg---UGCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 106875 0.71 0.411126
Target:  5'- cGGGCGcCGagcaGGGCCCGCGcCCCCc-- -3'
miRNA:   3'- -CUCGUuGCg---CCCGGGUGCuGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 2665 0.7 0.42837
Target:  5'- cGGCGGcCGCGGGCgCCGCcguguggcugGGCCCCGg- -3'
miRNA:   3'- cUCGUU-GCGCCCG-GGUG----------CUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 5766 0.7 0.42837
Target:  5'- cGGGCAggggGCG-GGGCCCG-GGCCCCGa- -3'
miRNA:   3'- -CUCGU----UGCgCCCGGGUgCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 23359 0.7 0.42837
Target:  5'- aGAGCGGCGCGGacGCCCcCGGCUCgGa- -3'
miRNA:   3'- -CUCGUUGCGCC--CGGGuGCUGGGgUau -5'
5617 3' -60.5 NC_001806.1 + 134463 0.7 0.43715
Target:  5'- uGGgGACGUGcGGCgacCCGCGACCCCGa- -3'
miRNA:   3'- cUCgUUGCGC-CCG---GGUGCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 1518 0.7 0.446033
Target:  5'- cAGCAggGCGCGGGCgcaaaagucccuCCGCGGCCCgCGc- -3'
miRNA:   3'- cUCGU--UGCGCCCG------------GGUGCUGGG-GUau -5'
5617 3' -60.5 NC_001806.1 + 74764 0.7 0.446033
Target:  5'- gGAGCGG-GCGaagguGGCCCGCGACgCCCGg- -3'
miRNA:   3'- -CUCGUUgCGC-----CCGGGUGCUG-GGGUau -5'
5617 3' -60.5 NC_001806.1 + 140682 0.7 0.446033
Target:  5'- -uGCuGCGCGGcGCCCGCGugCCgCGc- -3'
miRNA:   3'- cuCGuUGCGCC-CGGGUGCugGG-GUau -5'
5617 3' -60.5 NC_001806.1 + 44442 0.7 0.455016
Target:  5'- uAGCAGgcCGCGGGCCCGgCGuCCgCGUGg -3'
miRNA:   3'- cUCGUU--GCGCCCGGGU-GCuGGgGUAU- -5'
5617 3' -60.5 NC_001806.1 + 23327 0.7 0.464096
Target:  5'- aGGCGGC---GGCCCGCGACCCCcgAa -3'
miRNA:   3'- cUCGUUGcgcCCGGGUGCUGGGGuaU- -5'
5617 3' -60.5 NC_001806.1 + 138671 0.7 0.473269
Target:  5'- -uGCAGCGCccGGGCCUggauGCGACCCa--- -3'
miRNA:   3'- cuCGUUGCG--CCCGGG----UGCUGGGguau -5'
5617 3' -60.5 NC_001806.1 + 113147 0.69 0.482533
Target:  5'- gGGGCAGCGCcuGGCCCACGGgcgggUCCgAUGg -3'
miRNA:   3'- -CUCGUUGCGc-CCGGGUGCU-----GGGgUAU- -5'
5617 3' -60.5 NC_001806.1 + 125518 0.69 0.490944
Target:  5'- cGGCAcuuucugACGCcucaGGGCCUcCGACCCCAg- -3'
miRNA:   3'- cUCGU-------UGCG----CCCGGGuGCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 108083 0.69 0.491883
Target:  5'- cGAGCGACGUGccGUCCACGGCCUUGUu -3'
miRNA:   3'- -CUCGUUGCGCc-CGGGUGCUGGGGUAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.