miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5617 3' -60.5 NC_001806.1 + 150076 0.67 0.646328
Target:  5'- uGGCcGCGCGucccaggggaggcaGGCCCaccgcgggGCGGCCCCGUc -3'
miRNA:   3'- cUCGuUGCGC--------------CCGGG--------UGCUGGGGUAu -5'
5617 3' -60.5 NC_001806.1 + 106695 0.67 0.6393
Target:  5'- gGGGCucuuCcCGGGCCCccggGCGGCCCCcgGu -3'
miRNA:   3'- -CUCGuu--GcGCCCGGG----UGCUGGGGuaU- -5'
5617 3' -60.5 NC_001806.1 + 64729 0.67 0.6393
Target:  5'- cAGCAugaGCGCGGGUUCGCGGuucacggcaucUCCCAg- -3'
miRNA:   3'- cUCGU---UGCGCCCGGGUGCU-----------GGGGUau -5'
5617 3' -60.5 NC_001806.1 + 113082 0.67 0.6393
Target:  5'- gGGGCGuACGUGgcGGCCCcggcCGGCCCCGc- -3'
miRNA:   3'- -CUCGU-UGCGC--CCGGGu---GCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 151009 0.67 0.6393
Target:  5'- cGGGCGGC-CGaGGCCCA-GACCaCCAg- -3'
miRNA:   3'- -CUCGUUGcGC-CCGGGUgCUGG-GGUau -5'
5617 3' -60.5 NC_001806.1 + 99482 0.67 0.6393
Target:  5'- cGGCGGCGCGGGCCgugucaACGuCCaCGUGu -3'
miRNA:   3'- cUCGUUGCGCCCGGg-----UGCuGGgGUAU- -5'
5617 3' -60.5 NC_001806.1 + 51696 0.67 0.6393
Target:  5'- cGAGgAcccCGUGGGCgaCUGCGACCCCAg- -3'
miRNA:   3'- -CUCgUu--GCGCCCG--GGUGCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 26838 0.67 0.6393
Target:  5'- aGGgGGCGcCGGaGCCCcccGCGACCCCc-- -3'
miRNA:   3'- cUCgUUGC-GCC-CGGG---UGCUGGGGuau -5'
5617 3' -60.5 NC_001806.1 + 3575 0.67 0.629256
Target:  5'- aGGGCGGCGaGGaucCCCGCGGCgCCGUAc -3'
miRNA:   3'- -CUCGUUGCgCCc--GGGUGCUGgGGUAU- -5'
5617 3' -60.5 NC_001806.1 + 30250 0.67 0.629256
Target:  5'- cGAGCGcCGCcuccgGGGCCCGgcccccgcgcccCGGCCCCcgGg -3'
miRNA:   3'- -CUCGUuGCG-----CCCGGGU------------GCUGGGGuaU- -5'
5617 3' -60.5 NC_001806.1 + 150892 0.67 0.619215
Target:  5'- cGGGCAcggGCcuCGGGCCCcaggcACGGCCCgAUGa -3'
miRNA:   3'- -CUCGU---UGc-GCCCGGG-----UGCUGGGgUAU- -5'
5617 3' -60.5 NC_001806.1 + 21866 0.67 0.619215
Target:  5'- cGGGCGGCgGCGaGGaccCCCGCGGCCuCCGc- -3'
miRNA:   3'- -CUCGUUG-CGC-CC---GGGUGCUGG-GGUau -5'
5617 3' -60.5 NC_001806.1 + 45388 0.67 0.619215
Target:  5'- -uGCccCGgGGGCCCugGugCCCu-- -3'
miRNA:   3'- cuCGuuGCgCCCGGGugCugGGGuau -5'
5617 3' -60.5 NC_001806.1 + 23573 0.67 0.609183
Target:  5'- cAGCcACacgGCGGcGCCCGCGGCCgCCGc- -3'
miRNA:   3'- cUCGuUG---CGCC-CGGGUGCUGG-GGUau -5'
5617 3' -60.5 NC_001806.1 + 83100 0.67 0.609183
Target:  5'- cGAGC-GCGCGuauguGGCCUuCGAUCCCAg- -3'
miRNA:   3'- -CUCGuUGCGC-----CCGGGuGCUGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 24020 0.67 0.609183
Target:  5'- cGGCugUGCGGGCCggaCACGGCCgCCu-- -3'
miRNA:   3'- cUCGuuGCGCCCGG---GUGCUGG-GGuau -5'
5617 3' -60.5 NC_001806.1 + 11111 0.67 0.609183
Target:  5'- -uGCGcCGCGGGCCCucu-CCCCGg- -3'
miRNA:   3'- cuCGUuGCGCCCGGGugcuGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 26417 0.67 0.609183
Target:  5'- cGGCcGCcCGGGCCCACGGgcgccgUCCCAa- -3'
miRNA:   3'- cUCGuUGcGCCCGGGUGCU------GGGGUau -5'
5617 3' -60.5 NC_001806.1 + 143427 0.67 0.599168
Target:  5'- cGAGCGGC-CcGGCCCGCGcUCCCAc- -3'
miRNA:   3'- -CUCGUUGcGcCCGGGUGCuGGGGUau -5'
5617 3' -60.5 NC_001806.1 + 64182 0.67 0.599168
Target:  5'- cGGCGAUGCGGGUgUACaucuggaagacgGACUCCAUGu -3'
miRNA:   3'- cUCGUUGCGCCCGgGUG------------CUGGGGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.