miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 3' -59.7 NC_001806.1 + 26998 0.68 0.653585
Target:  5'- -cGGGcCGACCggGCUcgGUUCCGgCGCCg -3'
miRNA:   3'- caUCCuGCUGG--UGGa-CGAGGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 27245 0.66 0.738544
Target:  5'- -cAGGGCgGGCCGCCUcgggggcgggacugGCcaaucggCgGCCGCCa -3'
miRNA:   3'- caUCCUG-CUGGUGGA--------------CGa------GgCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 29032 0.68 0.642646
Target:  5'- -gGGGAcgcCGACCACCaUGacgacgaCUCCGCCuCCg -3'
miRNA:   3'- caUCCU---GCUGGUGG-AC-------GAGGCGGcGG- -5'
5622 3' -59.7 NC_001806.1 + 30293 0.65 0.786509
Target:  5'- gGgcGGAgcCGGCCGCCcGCcCCGCggacgcgCGCCg -3'
miRNA:   3'- -CauCCU--GCUGGUGGaCGaGGCG-------GCGG- -5'
5622 3' -59.7 NC_001806.1 + 30471 0.67 0.683287
Target:  5'- ---cGGCG-CCGCCccgcucccCUCCGCCGCCu -3'
miRNA:   3'- caucCUGCuGGUGGac------GAGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 30740 0.76 0.245387
Target:  5'- --cGGG-GGCCGCCUcUUCCGCCGCCg -3'
miRNA:   3'- cauCCUgCUGGUGGAcGAGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 31850 0.69 0.603855
Target:  5'- uGUGGGuguuaaguuuccGCGAgCGCCUGC-CCGCCcggacugaccugGCCu -3'
miRNA:   3'- -CAUCC------------UGCUgGUGGACGaGGCGG------------CGG- -5'
5622 3' -59.7 NC_001806.1 + 33759 0.66 0.760122
Target:  5'- -cGGcGGCGGCUGCggcggCUGCggCgGCCGCCg -3'
miRNA:   3'- caUC-CUGCUGGUG-----GACGa-GgCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 38031 0.69 0.583066
Target:  5'- -cGGGAccaccgcgacccCGACC-CCUGCgacgcccacggcgUCCGCCGCg -3'
miRNA:   3'- caUCCU------------GCUGGuGGACG-------------AGGCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 41402 0.68 0.653585
Target:  5'- --cGGAUGcgauccgugaGCCGCCUGC-CCaGCgCGCCg -3'
miRNA:   3'- cauCCUGC----------UGGUGGACGaGG-CG-GCGG- -5'
5622 3' -59.7 NC_001806.1 + 41626 0.69 0.603855
Target:  5'- uGUGGGGC--CCugCUGUUCCGUgGCg -3'
miRNA:   3'- -CAUCCUGcuGGugGACGAGGCGgCGg -5'
5622 3' -59.7 NC_001806.1 + 41690 0.68 0.673415
Target:  5'- -gGGGGCGGCgUGCC-GC-CCGCCGUg -3'
miRNA:   3'- caUCCUGCUG-GUGGaCGaGGCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 44751 0.67 0.73188
Target:  5'- -gGGGGCG-CCAgUUGCgggaaCUGCCGCa -3'
miRNA:   3'- caUCCUGCuGGUgGACGa----GGCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 45118 0.66 0.760122
Target:  5'- aGUAGcGACGGCCGugUGC-CaGUCGCCa -3'
miRNA:   3'- -CAUC-CUGCUGGUggACGaGgCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 49562 0.69 0.584053
Target:  5'- -gAGGACGACUACCcgGaagCCGUCggGCCg -3'
miRNA:   3'- caUCCUGCUGGUGGa-Cga-GGCGG--CGG- -5'
5622 3' -59.7 NC_001806.1 + 49592 0.67 0.722291
Target:  5'- -gAGGACGGCggcgggGCCcGUUCC-CCGCCc -3'
miRNA:   3'- caUCCUGCUGg-----UGGaCGAGGcGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 49707 0.71 0.497221
Target:  5'- uGUGGGACGAgU-CCgugcGCUCCGCCcuaGCCc -3'
miRNA:   3'- -CAUCCUGCUgGuGGa---CGAGGCGG---CGG- -5'
5622 3' -59.7 NC_001806.1 + 52457 0.68 0.632694
Target:  5'- -cGGGGCcgcccuGGCCGCggauCUGCUCCGCaacggggCGCCg -3'
miRNA:   3'- caUCCUG------CUGGUG----GACGAGGCG-------GCGG- -5'
5622 3' -59.7 NC_001806.1 + 53907 0.67 0.693118
Target:  5'- -cGGGGCgcuacagccgccGACCGCCUGCUCgUGCU-CCa -3'
miRNA:   3'- caUCCUG------------CUGGUGGACGAG-GCGGcGG- -5'
5622 3' -59.7 NC_001806.1 + 55023 0.68 0.653585
Target:  5'- aGUAGG-CGGCgGCCgUGCa-CGUCGCCu -3'
miRNA:   3'- -CAUCCuGCUGgUGG-ACGagGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.