miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 3' -59.7 NC_001806.1 + 21045 0.73 0.352141
Target:  5'- cGUAGG-UGACCuACCgUGCuacgUCCGCCGUCg -3'
miRNA:   3'- -CAUCCuGCUGG-UGG-ACG----AGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 21147 0.66 0.778429
Target:  5'- --cGGGCc-CCACCgacGggCCGCCGCCc -3'
miRNA:   3'- cauCCUGcuGGUGGa--CgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 21561 0.7 0.52562
Target:  5'- --cGGACcccacgGACCGCCUGUcgCCGCgccCGCCg -3'
miRNA:   3'- cauCCUG------CUGGUGGACGa-GGCG---GCGG- -5'
5622 3' -59.7 NC_001806.1 + 22306 0.66 0.760122
Target:  5'- -gGGGACguggcgcugGACCagGCCUGCUUccggaucucgggCGCCGCg -3'
miRNA:   3'- caUCCUG---------CUGG--UGGACGAG------------GCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 22454 0.7 0.55461
Target:  5'- ---cGGCGGCCGCCgugGC-CaugaGCCGCCg -3'
miRNA:   3'- caucCUGCUGGUGGa--CGaGg---CGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 22498 0.67 0.712629
Target:  5'- -aAGGGCuuccugcuGACCAgCCUGCgCCG-CGCCu -3'
miRNA:   3'- caUCCUG--------CUGGU-GGACGaGGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 22609 0.71 0.497221
Target:  5'- -gGGGuCG-CCGCCgucgCCGCCGCCg -3'
miRNA:   3'- caUCCuGCuGGUGGacgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 22726 0.7 0.55461
Target:  5'- -gGGGGCGACgACCccGacgCCGCcCGCCa -3'
miRNA:   3'- caUCCUGCUGgUGGa-Cga-GGCG-GCGG- -5'
5622 3' -59.7 NC_001806.1 + 22883 0.66 0.760122
Target:  5'- -cGGGGCuGGCCgggGCCcgGC-CCGCCaGCCc -3'
miRNA:   3'- caUCCUG-CUGG---UGGa-CGaGGCGG-CGG- -5'
5622 3' -59.7 NC_001806.1 + 23133 0.71 0.460477
Target:  5'- -cGGGACccgcGCCuGCCgaGCUCCGCgGCCg -3'
miRNA:   3'- caUCCUGc---UGG-UGGa-CGAGGCGgCGG- -5'
5622 3' -59.7 NC_001806.1 + 23233 0.76 0.263141
Target:  5'- --cGGACG-CCGCCgacgcgcugGCggCCGCCGCCg -3'
miRNA:   3'- cauCCUGCuGGUGGa--------CGa-GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 23566 0.66 0.741387
Target:  5'- -cGGGGCccaGCCACaCggcgGCgcccgcggCCGCCGCCc -3'
miRNA:   3'- caUCCUGc--UGGUG-Ga---CGa-------GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 23886 0.7 0.544889
Target:  5'- -gAGGACGugCGCgugguggugCUGUacucgCCGCUGCCg -3'
miRNA:   3'- caUCCUGCugGUG---------GACGa----GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 23951 0.7 0.535224
Target:  5'- cUGGGGgGGCCGCCggagUGgUCCGCCGa- -3'
miRNA:   3'- cAUCCUgCUGGUGG----ACgAGGCGGCgg -5'
5622 3' -59.7 NC_001806.1 + 24095 0.66 0.759195
Target:  5'- -cAGGGCGugCugCUGCUguccaCGCgggaccuggccuuCGCCg -3'
miRNA:   3'- caUCCUGCugGugGACGAg----GCG-------------GCGG- -5'
5622 3' -59.7 NC_001806.1 + 24599 0.66 0.760122
Target:  5'- -gAGGAgGcCCACUcGCa-CGCCGCCu -3'
miRNA:   3'- caUCCUgCuGGUGGaCGagGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 24790 0.69 0.593941
Target:  5'- ---cGACGACgGCCcggggGCcCUGCCGCCg -3'
miRNA:   3'- caucCUGCUGgUGGa----CGaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 26494 0.7 0.544889
Target:  5'- -cAGGagcgcgcccGCGGCCGCCccg-CCGCCGCCc -3'
miRNA:   3'- caUCC---------UGCUGGUGGacgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 26654 0.66 0.769333
Target:  5'- -gAGGccCGGcCCACCg---CCGCCGCCc -3'
miRNA:   3'- caUCCu-GCU-GGUGGacgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 26930 0.69 0.574198
Target:  5'- -cGGGuGCG-CCACCUGgugucugggcCUCgGCCGCCc -3'
miRNA:   3'- caUCC-UGCuGGUGGAC----------GAGgCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.