miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 3' -59.7 NC_001806.1 + 119868 0.73 0.352141
Target:  5'- gGgcGGGCGACgCGCCcGCccUCCGCUGCUg -3'
miRNA:   3'- -CauCCUGCUG-GUGGaCG--AGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 118753 0.67 0.722291
Target:  5'- -cGGGAauccccUGGCCGCCcugaUGCgCgGCCGCCc -3'
miRNA:   3'- caUCCU------GCUGGUGG----ACGaGgCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 117763 0.66 0.778429
Target:  5'- cGUGGcGACGGCCGaguCCUgGCUgcuauuucccUCGaCCGCCa -3'
miRNA:   3'- -CAUC-CUGCUGGU---GGA-CGA----------GGC-GGCGG- -5'
5622 3' -59.7 NC_001806.1 + 116471 0.66 0.750804
Target:  5'- --cGGACGugCGCCUGgaUUCGCUGgaCCu -3'
miRNA:   3'- cauCCUGCugGUGGACg-AGGCGGC--GG- -5'
5622 3' -59.7 NC_001806.1 + 115497 0.66 0.760122
Target:  5'- cGUGGaGACGGguucggcgguguCCACg-GCcaCCGCCGCCa -3'
miRNA:   3'- -CAUC-CUGCU------------GGUGgaCGa-GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 114276 0.71 0.451516
Target:  5'- --uGGACGGgcCCGCCaUGCUCaCGCUGCa -3'
miRNA:   3'- cauCCUGCU--GGUGG-ACGAG-GCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 113420 0.68 0.643641
Target:  5'- gGUGGGACGcCaCGCCaugGC-CC-CCGCCa -3'
miRNA:   3'- -CAUCCUGCuG-GUGGa--CGaGGcGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 113086 0.68 0.643641
Target:  5'- cGUAcGuGGCGGCCccgGCCgGCcCCGCCGCa -3'
miRNA:   3'- -CAU-C-CUGCUGG---UGGaCGaGGCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 112949 0.68 0.663512
Target:  5'- -gGGGAagGACCGCCaggUGCUgCGCCuGUCu -3'
miRNA:   3'- caUCCUg-CUGGUGG---ACGAgGCGG-CGG- -5'
5622 3' -59.7 NC_001806.1 + 111234 0.68 0.623736
Target:  5'- uGUGGGugGCGGCgGCggacaGCUuuGCCGCCu -3'
miRNA:   3'- -CAUCC--UGCUGgUGga---CGAggCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 111081 0.69 0.564382
Target:  5'- -gAGGcACGGCCcuguguGCCuUGUucgCCGCCGCCc -3'
miRNA:   3'- caUCC-UGCUGG------UGG-ACGa--GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 110935 0.7 0.544889
Target:  5'- gGUGGuGGCGcCgGCCUGUaUCCugGCCGCCa -3'
miRNA:   3'- -CAUC-CUGCuGgUGGACG-AGG--CGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 108553 0.67 0.722291
Target:  5'- --uGGccGCGcCCGCC-GCUCCGCgGUCa -3'
miRNA:   3'- cauCC--UGCuGGUGGaCGAGGCGgCGG- -5'
5622 3' -59.7 NC_001806.1 + 106102 0.68 0.663512
Target:  5'- ---cGAaGACCuACCUGCUCgGCCgGCCc -3'
miRNA:   3'- caucCUgCUGG-UGGACGAGgCGG-CGG- -5'
5622 3' -59.7 NC_001806.1 + 103180 1.11 0.000959
Target:  5'- uGUAGGACGACCACCUGCUCCGCCGCCg -3'
miRNA:   3'- -CAUCCUGCUGGUGGACGAGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 103116 0.68 0.633689
Target:  5'- -gGGGAgcuCGGCCGCCUGCauggcggcguucUCCagggcagcggcaGCCGCUg -3'
miRNA:   3'- caUCCU---GCUGGUGGACG------------AGG------------CGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 100621 0.74 0.32984
Target:  5'- gGUAGGuguguccgGCGAUCccgGCCUGCcgCCGCCGCUc -3'
miRNA:   3'- -CAUCC--------UGCUGG---UGGACGa-GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 98141 0.67 0.683287
Target:  5'- ----cGCGGCCcgggGCCUGCUacaGCCGCCc -3'
miRNA:   3'- cauccUGCUGG----UGGACGAgg-CGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 95775 0.69 0.564382
Target:  5'- -cAGGugGACCcggcCCUGCUCC-CCaGCa -3'
miRNA:   3'- caUCCugCUGGu---GGACGAGGcGG-CGg -5'
5622 3' -59.7 NC_001806.1 + 94638 0.76 0.251192
Target:  5'- -gGGGGCGACgAUC-GC-CCGCCGCCu -3'
miRNA:   3'- caUCCUGCUGgUGGaCGaGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.