miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5622 3' -59.7 NC_001806.1 + 69003 0.66 0.778429
Target:  5'- -cGGGAgauCGACCcgGCCauaaUGaUUCCGCCGCUc -3'
miRNA:   3'- caUCCU---GCUGG--UGG----AC-GAGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 73143 0.66 0.769333
Target:  5'- -gAGGACGACgGgCCcacgGUUCCGgCGUCc -3'
miRNA:   3'- caUCCUGCUGgU-GGa---CGAGGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 120360 0.66 0.778429
Target:  5'- -cGGcGACGACCuCCcgGC-CCGCUuuGCCg -3'
miRNA:   3'- caUC-CUGCUGGuGGa-CGaGGCGG--CGG- -5'
5622 3' -59.7 NC_001806.1 + 138951 0.66 0.769333
Target:  5'- -gGGGAaccggaGACCACCg---CCGCCGUUc -3'
miRNA:   3'- caUCCUg-----CUGGUGGacgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 148024 0.66 0.778429
Target:  5'- -cGGGA--GCCGCCg---CCGCCGCUg -3'
miRNA:   3'- caUCCUgcUGGUGGacgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 122425 0.66 0.741387
Target:  5'- -cAGGaACGugUugACCUGCUCCGCgugGUCc -3'
miRNA:   3'- caUCC-UGCugG--UGGACGAGGCGg--CGG- -5'
5622 3' -59.7 NC_001806.1 + 21147 0.66 0.778429
Target:  5'- --cGGGCc-CCACCgacGggCCGCCGCCc -3'
miRNA:   3'- cauCCUGcuGGUGGa--CgaGGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 75254 0.66 0.778429
Target:  5'- -cGGuGACGGCC-CUggGCgCgGCCGCCa -3'
miRNA:   3'- caUC-CUGCUGGuGGa-CGaGgCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 116471 0.66 0.750804
Target:  5'- --cGGACGugCGCCUGgaUUCGCUGgaCCu -3'
miRNA:   3'- cauCCUGCugGUGGACg-AGGCGGC--GG- -5'
5622 3' -59.7 NC_001806.1 + 45118 0.66 0.760122
Target:  5'- aGUAGcGACGGCCGugUGC-CaGUCGCCa -3'
miRNA:   3'- -CAUC-CUGCUGGUggACGaGgCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 53907 0.67 0.693118
Target:  5'- -cGGGGCgcuacagccgccGACCGCCUGCUCgUGCU-CCa -3'
miRNA:   3'- caUCCUG------------CUGGUGGACGAG-GCGGcGG- -5'
5622 3' -59.7 NC_001806.1 + 149936 0.67 0.701926
Target:  5'- -gGGGGCGGCCcgagucuGCCUGg-CUGCUGCg -3'
miRNA:   3'- caUCCUGCUGG-------UGGACgaGGCGGCGg -5'
5622 3' -59.7 NC_001806.1 + 126132 0.67 0.712629
Target:  5'- --cGGACGACgGCg-GCgaggCCGgCGCCg -3'
miRNA:   3'- cauCCUGCUGgUGgaCGa---GGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 5125 0.67 0.712629
Target:  5'- -cGGGGCG-CUGCUUGUucUCCGaCGCCa -3'
miRNA:   3'- caUCCUGCuGGUGGACG--AGGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 132072 0.67 0.693118
Target:  5'- cGUGGGGCccgcccGCCGCCc-CUCgCGCCGCUc -3'
miRNA:   3'- -CAUCCUGc-----UGGUGGacGAG-GCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 2700 0.67 0.693118
Target:  5'- -gGGGGCuGCCGCCg---CCaGCCGCCc -3'
miRNA:   3'- caUCCUGcUGGUGGacgaGG-CGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 78596 0.67 0.712629
Target:  5'- -cGGGccagcACG-UCGCCgUGCcggCCGCCGCCa -3'
miRNA:   3'- caUCC-----UGCuGGUGG-ACGa--GGCGGCGG- -5'
5622 3' -59.7 NC_001806.1 + 3645 0.67 0.683287
Target:  5'- -cGGcGGCGACCcccucgucAUCUGCgCCGgCGCCg -3'
miRNA:   3'- caUC-CUGCUGG--------UGGACGaGGCgGCGG- -5'
5622 3' -59.7 NC_001806.1 + 56446 0.67 0.712629
Target:  5'- -cAGGGCGGaagCGCCUgacacaGCUCCGucagggccaCCGCCa -3'
miRNA:   3'- caUCCUGCUg--GUGGA------CGAGGC---------GGCGG- -5'
5622 3' -59.7 NC_001806.1 + 132186 0.67 0.716502
Target:  5'- cGUGGGcgcgccugGCGGCCAUUcgcgacaccccccagUGCgcgUCCGCCGCUu -3'
miRNA:   3'- -CAUCC--------UGCUGGUGG---------------ACG---AGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.